HHsearch alignment for GI: 254781026 and conserved domain: cd03219
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.30 E-value=0.04 Score=33.23 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=21.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
T Consensus 31 liG~nGaGKSTL~~~i~Gl~~p~ 53 (236)
T cd03219 31 LIGPNGAGKTTLFNLISGFLRPT 53 (236)
T ss_pred EECCCCCCHHHHHHHHHCCCCCC
T ss_conf 99899973999999996798788