HHsearch alignment for GI: 254781026 and conserved domain: cd03220
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.98 E-value=0.012 Score=36.37 Aligned_cols=24 Identities=46% Similarity=0.524 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
T Consensus 53 ilG~NGaGKSTLl~~i~Gl~~p~~ 76 (224)
T cd03220 53 LIGRNGAGKSTLLRLLAGIYPPDS 76 (224)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 997999819999999975877787