HHsearch alignment for GI: 254781026 and conserved domain: cd03221
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.15 E-value=0.022 Score=34.71 Aligned_cols=84 Identities=24% Similarity=0.272 Sum_probs=48.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHH-H
Q ss_conf 977786059999999887488989788532300000027888756531112020377521001102343456827998-2
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDS-L 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~-l 79 (186)
T Consensus 31 l~G~NGsGKTTl~~~l~G~~~~~~G~-------i-~~~~~~---------~i-------~y~~QLSgGqkqr~~la~al~ 86 (144)
T cd03221 31 LVGRNGAGKSTLLKLIAGELEPDEGI-------V-TWGSTV---------KI-------GYFEQLSGGEKMRLALAKLLL 86 (144)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCEE-------E-EECCCC---------EE-------EEEHHCCHHHHHHHHHHHHHC
T ss_conf 99899984999999984898898509-------9-999960---------89-------987007999999999999972
Q ss_pred CCCCEEEEECH-HHCCHHHHHHHHHHHHCC
Q ss_conf 79988998038-785988999999999719
Q gi|254781026|r 80 AHNGVLFLDEI-PEFSPQTLNALRQPLETG 108 (186)
Q Consensus 80 Ah~GVLflDE~-~e~~~~~l~~L~~~le~g 108 (186)
T Consensus 87 ~~p~iliLDEPt~~LD~~~~~~i~~~l~~~ 116 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 599899995775558999999999999970