HHsearch alignment for GI: 254781026 and conserved domain: cd03222

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.69  E-value=0.0018  Score=41.14  Aligned_cols=87  Identities=25%  Similarity=0.405  Sum_probs=49.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf             97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA   80 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA   80 (186)
T Consensus        30 ilGpNGaGKSTllk~i~G~l~p~~G~i~--------~~g~~----------~~~~pq----~~~LSGGqrQRv~iAral~   87 (177)
T cd03222          30 IVGPNGTGKTTAVKILAGQLIPNGDNDE--------WDGIT----------PVYKPQ----YIDLSGGELQRVAIAAALL   87 (177)
T ss_pred             EECCCCCCHHHHHHHHHCCCCCCCCCEE--------ECCCC----------EECCCC----CCCCCHHHHHHHHHHHHHH
T ss_conf             9899999999999999688678899466--------66861----------221555----1507989999999999982


Q ss_pred             -CCCEEEEECH-HHCCH----HHHHHHHHHHHCCC
Q ss_conf             -9988998038-78598----89999999997195
Q gi|254781026|r   81 -HNGVLFLDEI-PEFSP----QTLNALRQPLETGE  109 (186)
Q Consensus        81 -h~GVLflDE~-~e~~~----~~l~~L~~~le~g~  109 (186)
T Consensus        88 ~~p~lllLDEPts~LD~~~r~~i~~~ik~l~~~~~  122 (177)
T cd03222          88 RNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGK  122 (177)
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             39999997488653899999999999999999659