HHsearch alignment for GI: 254781026 and conserved domain: cd03223
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.74 E-value=0.0093 Score=36.95 Aligned_cols=98 Identities=26% Similarity=0.273 Sum_probs=52.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCH-------HHCCCCCCCCC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100-------11023434568
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTI-------AALIGGGLQVL 73 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~-------~~l~gg~~~~~ 73 (186)
T Consensus 32 i~G~sGsGKSTLl~~l~Gl~~~~~G~-------i~~-~~--~~~i~~v~Q~~~l~~~-tl~e~l~~p~~~~LSGGqkQRv 100 (166)
T cd03223 32 ITGPSGTGKSSLFRALAGLWPWGSGR-------IGM-PE--GEDLLFLPQRPYLPLG-TLREQLIYPWDDVLSGGEQQRL 100 (166)
T ss_pred EECCCCCCHHHHHHHHCCCCCCCCCE-------EEE-CC--CCCEEEECCCCCCCCC-CHHHHHHCCCCCCCCHHHHHHH
T ss_conf 99589998899999986987699867-------997-69--9879998564665887-5999963615467899999999
Q ss_pred HHH-HHHCCCCEEEEECH-HHCCHHHHHHHHHHHHCCC
Q ss_conf 279-98279988998038-7859889999999997195
Q gi|254781026|r 74 PGE-DSLAHNGVLFLDEI-PEFSPQTLNALRQPLETGE 109 (186)
Q Consensus 74 pG~-i~lAh~GVLflDE~-~e~~~~~l~~L~~~le~g~ 109 (186)
T Consensus 101 alARal~~~p~iliLDEpTs~LD~~~~~~l~~~l~~~~ 138 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG 138 (166)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99999964999999758533289999999999999779