HHsearch alignment for GI: 254781026 and conserved domain: cd03223

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.74  E-value=0.0093  Score=36.95  Aligned_cols=98  Identities=26%  Similarity=0.273  Sum_probs=52.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCH-------HHCCCCCCCCC
Q ss_conf             97778605999999988748898978853230000002788875653111202037752100-------11023434568
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTI-------AALIGGGLQVL   73 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~-------~~l~gg~~~~~   73 (186)
T Consensus        32 i~G~sGsGKSTLl~~l~Gl~~~~~G~-------i~~-~~--~~~i~~v~Q~~~l~~~-tl~e~l~~p~~~~LSGGqkQRv  100 (166)
T cd03223          32 ITGPSGTGKSSLFRALAGLWPWGSGR-------IGM-PE--GEDLLFLPQRPYLPLG-TLREQLIYPWDDVLSGGEQQRL  100 (166)
T ss_pred             EECCCCCCHHHHHHHHCCCCCCCCCE-------EEE-CC--CCCEEEECCCCCCCCC-CHHHHHHCCCCCCCCHHHHHHH
T ss_conf             99589998899999986987699867-------997-69--9879998564665887-5999963615467899999999


Q ss_pred             HHH-HHHCCCCEEEEECH-HHCCHHHHHHHHHHHHCCC
Q ss_conf             279-98279988998038-7859889999999997195
Q gi|254781026|r   74 PGE-DSLAHNGVLFLDEI-PEFSPQTLNALRQPLETGE  109 (186)
Q Consensus        74 pG~-i~lAh~GVLflDE~-~e~~~~~l~~L~~~le~g~  109 (186)
T Consensus       101 alARal~~~p~iliLDEpTs~LD~~~~~~l~~~l~~~~  138 (166)
T cd03223         101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG  138 (166)
T ss_pred             HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             99999964999999758533289999999999999779