HHsearch alignment for GI: 254781026 and conserved domain: cd03224
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.42 E-value=0.019 Score=35.16 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
T Consensus 31 liG~nGaGKSTLl~~i~Gl~~p~~ 54 (222)
T cd03224 31 LLGRNGAGKTTLLKTIMGLLPPRS 54 (222)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999859999999977988996