HHsearch alignment for GI: 254781026 and conserved domain: cd03228
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.02 E-value=0.027 Score=34.28 Aligned_cols=105 Identities=23% Similarity=0.333 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECC-CCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCC--HHHH
Q ss_conf 97778605999999988748898978853230000002-78887565311120203775210011023434568--2799
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSIS-GHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVL--PGED 77 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~-g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~--pG~i 77 (186)
T Consensus 33 ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf-~~tv~eNiLSgGq~Qri~lARal 111 (171)
T cd03228 33 IVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLF-SGTIRENILSGGQRQRIAIARAL 111 (171)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCC-CCCHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999983999999997677589748999999988599899863189996668437-57799977448899999999999
Q ss_pred HHCCCCEEEEECHH-HCCHHHHHHHHHHHHC
Q ss_conf 82799889980387-8598899999999971
Q gi|254781026|r 78 SLAHNGVLFLDEIP-EFSPQTLNALRQPLET 107 (186)
Q Consensus 78 ~lAh~GVLflDE~~-e~~~~~l~~L~~~le~ 107 (186)
T Consensus 112 -~~~p~illlDEpts~LD~~~~~~i~~~l~~ 141 (171)
T cd03228 112 -LRDPPILILDEATSALDPETEALILEALRA 141 (171)
T ss_pred -HHCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf -748998999577667998999999999999