HHsearch alignment for GI: 254781026 and conserved domain: cd03230
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.0013 Score=41.97 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=48.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCC-HHHHHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434568-279982
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVL-PGEDSL 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~-pG~i~l 79 (186)
T Consensus 31 l~G~NGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~ig~v~q~~~l~~~ltv~e~l~LSgG~kqrv~ia~al 110 (173)
T cd03230 31 LLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLALAQAL 110 (173)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHCCEEEEECCCCCCCCCCHHHHHHCCHHHHHHHHHHHHH
T ss_conf 98789979999999997685778788999999988684888657899956876671267789863398999999999999
Q ss_pred C-CCCEEEEECH-HHCCHHHHHHHHHHHHC
Q ss_conf 7-9988998038-78598899999999971
Q gi|254781026|r 80 A-HNGVLFLDEI-PEFSPQTLNALRQPLET 107 (186)
Q Consensus 80 A-h~GVLflDE~-~e~~~~~l~~L~~~le~ 107 (186)
T Consensus 111 ~~~p~lllLDEPt~gLD~~~~~~i~~~i~~ 140 (173)
T cd03230 111 LHDPELLILDEPTSGLDPESRREFWELLRE 140 (173)
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 649999999088657999999999999999