HHsearch alignment for GI: 254781026 and conserved domain: cd03233
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.08 E-value=0.0097 Score=36.86 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
T Consensus 38 llG~nGsGKSTLl~~l~G~~~~~ 60 (202)
T cd03233 38 VLGRPGSGCSTLLKALANRTEGN 60 (202)
T ss_pred EECCCCCCHHHHHHHHHCCCCCC
T ss_conf 99899998899999983787898