HHsearch alignment for GI: 254781026 and conserved domain: cd03237
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.27 E-value=0.0088 Score=37.11 Aligned_cols=24 Identities=29% Similarity=0.575 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
T Consensus 30 liGpNGaGKSTLlk~l~Gll~p~~ 53 (246)
T cd03237 30 ILGPNGIGKTTFIKMLAGVLKPDE 53 (246)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 997999769999999977878886