HHsearch alignment for GI: 254781026 and conserved domain: cd03246
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.83 E-value=0.013 Score=36.02 Aligned_cols=104 Identities=25% Similarity=0.271 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCC-CCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCC--HHHH
Q ss_conf 977786059999999887488989788532300000027-8887565311120203775210011023434568--2799
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISG-HSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVL--PGED 77 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g-~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~--pG~i 77 (186)
T Consensus 33 IvG~sGsGKSTLl~ll~gl~~p~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~-ti~eNiLSGGQkQRvalARal 111 (173)
T cd03246 33 IIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENILSGGQRQRLGLARAL 111 (173)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCEECCC-CHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999998099999999666667999899999993328998984208999088836777-589976769999999999998
Q ss_pred HHCCCCEEEEECHH-HCCHHHHHHHHHHHH
Q ss_conf 82799889980387-859889999999997
Q gi|254781026|r 78 SLAHNGVLFLDEIP-EFSPQTLNALRQPLE 106 (186)
Q Consensus 78 ~lAh~GVLflDE~~-e~~~~~l~~L~~~le 106 (186)
T Consensus 112 -~~~p~ililDEpts~LD~~~e~~i~~~l~ 140 (173)
T cd03246 112 -YGNPRILVLDEPNSHLDVEGERALNQAIA 140 (173)
T ss_pred -HCCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf -27999999968766899899999999999