HHsearch alignment for GI: 254781026 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.61 E-value=0.017 Score=35.46 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=21.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
T Consensus 45 IvG~sGsGKSTL~~ll~gl~~p~~ 68 (226)
T cd03248 45 LVGPSGSGKSTVVALLENFYQPQG 68 (226)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999849999999964546788