HHsearch alignment for GI: 254781026 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.40 E-value=0.039 Score=33.29 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
T Consensus 33 IvG~sGsGKSTLl~ll~gl~~p~~ 56 (234)
T cd03251 33 LVGPSGSGKSTLVNLIPRFYDVDS 56 (234)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 998999829999999966766788