HHsearch alignment for GI: 254781026 and conserved domain: cd03264
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.91 E-value=0.013 Score=36.17 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
T Consensus 30 llGpNGAGKSTll~~i~Gl~~p~s 53 (211)
T cd03264 30 LLGPNGAGKTTLMRILATLTPPSS 53 (211)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999998239999999975966896