HHsearch alignment for GI: 254781026 and conserved domain: cd03266
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.21 E-value=0.022 Score=34.76 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
T Consensus 36 llG~NGaGKSTllk~i~Gl~~p~~ 59 (218)
T cd03266 36 LLGPNGAGKTTTLRMLAGLLEPDA 59 (218)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999849999999977977897