HHsearch alignment for GI: 254781026 and conserved domain: cd03267
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.92 E-value=0.028 Score=34.14 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
T Consensus 52 LlGpNGaGKSTllk~l~Gl~~p~ 74 (236)
T cd03267 52 FIGPNGAGKTTTLKILSGLLQPT 74 (236)
T ss_pred EECCCCCHHHHHHHHHHCCCCCC
T ss_conf 99999830999999996494887