HHsearch alignment for GI: 254781026 and conserved domain: cd03294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.76 E-value=0.0048 Score=38.65 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=21.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
T Consensus 55 ivG~SGsGKSTLLr~i~GL~~p~~ 78 (269)
T cd03294 55 IMGLSGSGKSTLLRCINRLIEPTS 78 (269)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 998998489999999975999997