HHsearch alignment for GI: 254781026 and conserved domain: pfam00004
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=99.15 E-value=1.6e-10 Score=82.46 Aligned_cols=113 Identities=27% Similarity=0.389 Sum_probs=66.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHH---
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799---
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGED--- 77 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i--- 77 (186)
T Consensus 3 l~GppGtGKT~~a~~la~~~~~----------~~~~v~~~~-----~~--------------~~~~g~~~~~i~~~f~~a 53 (131)
T pfam00004 3 LYGPPGTGKTTLAKAVAKELGA----------PFIEISGSE-----LV--------------SKYVGESEKRLRELFEAA 53 (131)
T ss_pred EECCCCCCHHHHHHHHHHHHCC----------CCEECCCCC-----CC--------------CCCCCHHHHHHHHHHHHH
T ss_conf 7899999999999999999789----------853324201-----22--------------233450688899999999
Q ss_pred HHCCCCEEEEECHHHCCH-----------HHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 827998899803878598-----------899999999971952301003078984701567522746588788988764
Q gi|254781026|r 78 SLAHNGVLFLDEIPEFSP-----------QTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVC 146 (186)
Q Consensus 78 ~lAh~GVLflDE~~e~~~-----------~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c 146 (186)
T Consensus 54 ~~~~p~Il~iDe~d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~----------~~~~v~~I~tTN~-~----------- 111 (131)
T pfam00004 54 KKLAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTS----------SLSKVIVIAATNR-P----------- 111 (131)
T ss_pred HHCCCCEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC----------CCCCEEEEEECCC-H-----------
T ss_conf 97499189831167775167888887513268789999850224----------6887699997599-0-----------
Q ss_pred CCCHHHHHHHHHHCCHHHH-HCCCEEEECC
Q ss_conf 3899999999851224321-0042599838
Q gi|254781026|r 147 IRGPRCATEYQARISGPLM-DRIDIRIAVP 175 (186)
Q Consensus 147 ~c~~~~~~~Y~~rls~pll-dR~Dl~v~~~ 175 (186)
T Consensus 112 -----------~~ld~al~r~Rfd~~i~~p 130 (131)
T pfam00004 112 -----------DKLDPALLRGRFDRIIEFP 130 (131)
T ss_pred -----------HHCCHHHHCCCCEEEEEEC
T ss_conf -----------4499779628332899806