HHsearch alignment for GI: 254781026 and conserved domain: pfam00004

>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=99.15  E-value=1.6e-10  Score=82.46  Aligned_cols=113  Identities=27%  Similarity=0.389  Sum_probs=66.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHH---
Q ss_conf             97778605999999988748898978853230000002788875653111202037752100110234345682799---
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGED---   77 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i---   77 (186)
T Consensus         3 l~GppGtGKT~~a~~la~~~~~----------~~~~v~~~~-----~~--------------~~~~g~~~~~i~~~f~~a   53 (131)
T pfam00004         3 LYGPPGTGKTTLAKAVAKELGA----------PFIEISGSE-----LV--------------SKYVGESEKRLRELFEAA   53 (131)
T ss_pred             EECCCCCCHHHHHHHHHHHHCC----------CCEECCCCC-----CC--------------CCCCCHHHHHHHHHHHHH
T ss_conf             7899999999999999999789----------853324201-----22--------------233450688899999999


Q ss_pred             HHCCCCEEEEECHHHCCH-----------HHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             827998899803878598-----------899999999971952301003078984701567522746588788988764
Q gi|254781026|r   78 SLAHNGVLFLDEIPEFSP-----------QTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVC  146 (186)
Q Consensus        78 ~lAh~GVLflDE~~e~~~-----------~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c  146 (186)
T Consensus        54 ~~~~p~Il~iDe~d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~----------~~~~v~~I~tTN~-~-----------  111 (131)
T pfam00004        54 KKLAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTS----------SLSKVIVIAATNR-P-----------  111 (131)
T ss_pred             HHCCCCEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC----------CCCCEEEEEECCC-H-----------
T ss_conf             97499189831167775167888887513268789999850224----------6887699997599-0-----------


Q ss_pred             CCCHHHHHHHHHHCCHHHH-HCCCEEEECC
Q ss_conf             3899999999851224321-0042599838
Q gi|254781026|r  147 IRGPRCATEYQARISGPLM-DRIDIRIAVP  175 (186)
Q Consensus       147 ~c~~~~~~~Y~~rls~pll-dR~Dl~v~~~  175 (186)
T Consensus       112 -----------~~ld~al~r~Rfd~~i~~p  130 (131)
T pfam00004       112 -----------DKLDPALLRGRFDRIIEFP  130 (131)
T ss_pred             -----------HHCCHHHHCCCCEEEEEEC
T ss_conf             -----------4499779628332899806