HHsearch alignment for GI: 254781026 and conserved domain: pfam00158

>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=99.37  E-value=1.4e-12  Score=94.50  Aligned_cols=105  Identities=28%  Similarity=0.387  Sum_probs=78.3

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCC-----CCCHHHCCC-------CC
Q ss_conf             777860599999998874889897885323000000278887565311120203775-----210011023-------43
Q gi|254781026|r    2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHH-----SVTIAALIG-------GG   69 (186)
Q Consensus         2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~-----~~~~~~l~g-------g~   69 (186)
T Consensus        28 ~GE~GtGK~~lAr~IH~~S~r~--------------------~------~pfi~vnc~~~~~~~le~~LFG~~~g~f~ga   81 (168)
T pfam00158        28 TGESGTGKELFARAIHQLSPRA--------------------D------GPFVAVNCAAIPEELLESELFGHEKGAFTGA   81 (168)
T ss_pred             ECCCCCCHHHHHHHHHHHCCCC--------------------C------CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC
T ss_conf             8999888899999999852435--------------------6------8831256789987799998758766766898


Q ss_pred             CCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf             45682799827998899803878598899999999971952301003078984701567522746
Q gi|254781026|r   70 LQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC  134 (186)
Q Consensus        70 ~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc  134 (186)
T Consensus        82 ~~~~~G~le~A~gGTL~LdeI~~L~~~~Q~~Ll~~L~~~~~--~~~g~~~~~~~~vRiIast~~~  144 (168)
T pfam00158        82 VSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEF--ERVGGTKPIKVDVRIIAATNRD  144 (168)
T ss_pred             CCCCCCCEEECCCCEEECCCHHHCCHHHHHHHHHHHHCCEE--EECCCCCEEEEEEEEEEECCCC
T ss_conf             75789964226998788024413999999999999857969--9779984588854999965988