HHsearch alignment for GI: 254781026 and conserved domain: pfam00158
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=99.37 E-value=1.4e-12 Score=94.50 Aligned_cols=105 Identities=28% Similarity=0.387 Sum_probs=78.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCC-----CCCHHHCCC-------CC
Q ss_conf 777860599999998874889897885323000000278887565311120203775-----210011023-------43
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHH-----SVTIAALIG-------GG 69 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~-----~~~~~~l~g-------g~ 69 (186)
T Consensus 28 ~GE~GtGK~~lAr~IH~~S~r~--------------------~------~pfi~vnc~~~~~~~le~~LFG~~~g~f~ga 81 (168)
T pfam00158 28 TGESGTGKELFARAIHQLSPRA--------------------D------GPFVAVNCAAIPEELLESELFGHEKGAFTGA 81 (168)
T ss_pred ECCCCCCHHHHHHHHHHHCCCC--------------------C------CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC
T ss_conf 8999888899999999852435--------------------6------8831256789987799998758766766898
Q ss_pred CCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf 45682799827998899803878598899999999971952301003078984701567522746
Q gi|254781026|r 70 LQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 70 ~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc 134 (186)
T Consensus 82 ~~~~~G~le~A~gGTL~LdeI~~L~~~~Q~~Ll~~L~~~~~--~~~g~~~~~~~~vRiIast~~~ 144 (168)
T pfam00158 82 VSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEF--ERVGGTKPIKVDVRIIAATNRD 144 (168)
T ss_pred CCCCCCCEEECCCCEEECCCHHHCCHHHHHHHHHHHHCCEE--EECCCCCEEEEEEEEEEECCCC
T ss_conf 75789964226998788024413999999999999857969--9779984588854999965988