HHsearch alignment for GI: 254781026 and conserved domain: pfam01057
>pfam01057 Parvo_NS1 Parvovirus non-structural protein NS1. This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.
Probab=94.21 E-value=0.2 Score=29.15 Aligned_cols=88 Identities=13% Similarity=0.239 Sum_probs=52.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
T Consensus 118 ~~Gp~~TGks~la~ai~~~~~~-----------~g~v~~~N-~~f------p~------------------------~d~ 155 (271)
T pfam01057 118 FYGPASTGKTNLAQAIAHAVPL-----------YGCVNWTN-ENF------PF------------------------NDC 155 (271)
T ss_pred EECCCCCCHHHHHHHHHHHCCC-----------EEEECCCC-CCC------CC------------------------CCC
T ss_conf 9889876789999999986895-----------27851787-788------76------------------------446
Q ss_pred -CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCE-EEEECCCEEEEEECC
Q ss_conf -9988998038785988999999999719523010030-789847015675227
Q gi|254781026|r 81 -HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANR-KISYPSRIQLIAAMN 132 (186)
Q Consensus 81 -h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~-~~~~Pa~f~Lvaa~N 132 (186)
T Consensus 156 ~~~~~~wwee-~~~~~~~ve~~r~il~G~~i~vD~k~k~~~~l~~~P-viiTsn 207 (271)
T pfam01057 156 PNKLLIWWEE-GLMTVKVVELAKAILGGTDVRVDQKCKGSVEIEPTP-VIITSN 207 (271)
T ss_pred CCCEEEEECC-CCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCC-EEEEEC
T ss_conf 5478999807-887188999999972999625634789800237997-899827