HHsearch alignment for GI: 254781026 and conserved domain: pfam01057

>pfam01057 Parvo_NS1 Parvovirus non-structural protein NS1. This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.
Probab=94.21  E-value=0.2  Score=29.15  Aligned_cols=88  Identities=13%  Similarity=0.239  Sum_probs=52.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf             97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA   80 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA   80 (186)
T Consensus       118 ~~Gp~~TGks~la~ai~~~~~~-----------~g~v~~~N-~~f------p~------------------------~d~  155 (271)
T pfam01057       118 FYGPASTGKTNLAQAIAHAVPL-----------YGCVNWTN-ENF------PF------------------------NDC  155 (271)
T ss_pred             EECCCCCCHHHHHHHHHHHCCC-----------EEEECCCC-CCC------CC------------------------CCC
T ss_conf             9889876789999999986895-----------27851787-788------76------------------------446


Q ss_pred             -CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCE-EEEECCCEEEEEECC
Q ss_conf             -9988998038785988999999999719523010030-789847015675227
Q gi|254781026|r   81 -HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANR-KISYPSRIQLIAAMN  132 (186)
Q Consensus        81 -h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~-~~~~Pa~f~Lvaa~N  132 (186)
T Consensus       156 ~~~~~~wwee-~~~~~~~ve~~r~il~G~~i~vD~k~k~~~~l~~~P-viiTsn  207 (271)
T pfam01057       156 PNKLLIWWEE-GLMTVKVVELAKAILGGTDVRVDQKCKGSVEIEPTP-VIITSN  207 (271)
T ss_pred             CCCEEEEECC-CCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCC-EEEEEC
T ss_conf             5478999807-887188999999972999625634789800237997-899827