HHsearch alignment for GI: 254781026 and conserved domain: pfam01443
>pfam01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase. Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.
Probab=94.39 E-value=0.055 Score=32.43 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=17.1
Q ss_pred CCEEEEECHHHCCHHHHHHHH
Q ss_conf 988998038785988999999
Q gi|254781026|r 82 NGVLFLDEIPEFSPQTLNALR 102 (186)
Q Consensus 82 ~GVLflDE~~e~~~~~l~~L~ 102 (186)
T Consensus 60 ~~~~iiDE~~~~~~g~l~~~~ 80 (226)
T pfam01443 60 GKILILDEYTLLPPGYILLLA 80 (226)
T ss_pred CCEEEECCCCCCCHHHHHHHH
T ss_conf 788998964566816899987