HHsearch alignment for GI: 254781026 and conserved domain: pfam03969

>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=97.29  E-value=0.00032  Score=45.55  Aligned_cols=104  Identities=20%  Similarity=0.189  Sum_probs=54.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf             97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA   80 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA   80 (186)
T Consensus        66 l~G~VGrGKTmLMDlFy~~lp~~~-K-----~R~HF-------------h~FM~~vH~~--l~~~~~~~dpl~~va~~l~  124 (361)
T pfam03969        66 LWGGVGRGKTHLMDSFFESLPGER-K-----RRTHF-------------HRFMFRVHDE--LTTLQGGDDPLPIAADRFA  124 (361)
T ss_pred             EECCCCCCHHHHHHHHHHHCCCCC-C-----CCCCH-------------HHHHHHHHHH--HHHHHCCCCCHHHHHHHHH
T ss_conf             889988869999999998677534-4-----45667-------------8999999999--9997667763899999997


Q ss_pred             CC-CEEEEECHHHC---CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCC
Q ss_conf             99-88998038785---98899999999971952301003078984701567522746588788
Q gi|254781026|r   81 HN-GVLFLDEIPEF---SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSN  140 (186)
Q Consensus        81 h~-GVLflDE~~e~---~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~  140 (186)
T Consensus       125 ~~~~lLCfDEFqV~DIaDAMIL~rLf~~Lf~~g---------------vvlV~TSN~~P~~LY~  173 (361)
T pfam03969       125 NEARLLCFDEFEVDDIGDAMILGRLFEALFARG---------------VSLVATSNTAPEQLYR  173 (361)
T ss_pred             HCCCEEEEEEEEECCHHHHHHHHHHHHHHHHCC---------------CEEEEECCCCHHHHHC
T ss_conf             258779976356167888999999999999779---------------7899808999899836