HHsearch alignment for GI: 254781026 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.54 E-value=1.8e-14 Score=105.69 Aligned_cols=122 Identities=24% Similarity=0.334 Sum_probs=77.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHH-H
Q ss_conf 977786059999999887488989788532300000027888756531112020377521001102343456827998-2
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDS-L 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~-l 79 (186)
T Consensus 55 f~GPPG~GKTTlAriiAk~~~----------~~~~~~s~~~-----i------------~~~~di--------~~~l~~~ 99 (234)
T pfam05496 55 LYGPPGLGKTTLANIIANEMG----------VNIRITSGPA-----L------------EKPGDL--------AAILTNL 99 (234)
T ss_pred EECCCCCCHHHHHHHHHHHHC----------CCEEEECCHH-----H------------HHHHHH--------HHHHHHC
T ss_conf 878999988899999998408----------7537614266-----6------------438999--------9999845
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEH--HCCE----EEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 7998899803878598899999999971952301--0030----789847015675227465887889887643899999
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIA--RANR----KISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCA 153 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~--R~g~----~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~ 153 (186)
T Consensus 100 ~~~~ILFIDEIHr~nK~qqd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P-~FtLIgATTe~------------------- 159 (234)
T pfam05496 100 EPGDVLFIDEIHRLNRAVEEILYPAMEDFRLDIVIGKGPSARSIRLDLP-PFTLVGATTRA------------------- 159 (234)
T ss_pred CCCCEEEEECHHHCCHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCCC-CEEEEEECCCC-------------------
T ss_conf 8998899966543587688744553346169999636766324652689-75998521566-------------------
Q ss_pred HHHHHHCCHHHHHCCCEEEECCCCCHHH
Q ss_conf 9998512243210042599838856688
Q gi|254781026|r 154 TEYQARISGPLMDRIDIRIAVPSRTHIR 181 (186)
Q Consensus 154 ~~Y~~rls~plldR~Dl~v~~~~~~~~~ 181 (186)
T Consensus 160 ----~~l~~pl~sR~~i~~~l~~l~~ed 183 (234)
T pfam05496 160 ----GLLTSPLRDRFGIVLRLEFYSVEE 183 (234)
T ss_pred ----CCCCHHHHHHHHHEEECCCCCHHH
T ss_conf ----647777997621124424689999