HHsearch alignment for GI: 254781026 and conserved domain: pfam05496

>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.54  E-value=1.8e-14  Score=105.69  Aligned_cols=122  Identities=24%  Similarity=0.334  Sum_probs=77.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHH-H
Q ss_conf             977786059999999887488989788532300000027888756531112020377521001102343456827998-2
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDS-L   79 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~-l   79 (186)
T Consensus        55 f~GPPG~GKTTlAriiAk~~~----------~~~~~~s~~~-----i------------~~~~di--------~~~l~~~   99 (234)
T pfam05496        55 LYGPPGLGKTTLANIIANEMG----------VNIRITSGPA-----L------------EKPGDL--------AAILTNL   99 (234)
T ss_pred             EECCCCCCHHHHHHHHHHHHC----------CCEEEECCHH-----H------------HHHHHH--------HHHHHHC
T ss_conf             878999988899999998408----------7537614266-----6------------438999--------9999845


Q ss_pred             CCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEH--HCCE----EEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             7998899803878598899999999971952301--0030----789847015675227465887889887643899999
Q gi|254781026|r   80 AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIA--RANR----KISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCA  153 (186)
Q Consensus        80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~--R~g~----~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~  153 (186)
T Consensus       100 ~~~~ILFIDEIHr~nK~qqd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P-~FtLIgATTe~-------------------  159 (234)
T pfam05496       100 EPGDVLFIDEIHRLNRAVEEILYPAMEDFRLDIVIGKGPSARSIRLDLP-PFTLVGATTRA-------------------  159 (234)
T ss_pred             CCCCEEEEECHHHCCHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCCC-CEEEEEECCCC-------------------
T ss_conf             8998899966543587688744553346169999636766324652689-75998521566-------------------


Q ss_pred             HHHHHHCCHHHHHCCCEEEECCCCCHHH
Q ss_conf             9998512243210042599838856688
Q gi|254781026|r  154 TEYQARISGPLMDRIDIRIAVPSRTHIR  181 (186)
Q Consensus       154 ~~Y~~rls~plldR~Dl~v~~~~~~~~~  181 (186)
T Consensus       160 ----~~l~~pl~sR~~i~~~l~~l~~ed  183 (234)
T pfam05496       160 ----GLLTSPLRDRFGIVLRLEFYSVEE  183 (234)
T ss_pred             ----CCCCHHHHHHHHHEEECCCCCHHH
T ss_conf             ----647777997621124424689999