HHsearch alignment for GI: 254781026 and conserved domain: pfam07724

>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.52  E-value=2.9e-14  Score=104.48  Aligned_cols=151  Identities=18%  Similarity=0.136  Sum_probs=84.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCC-----CHHHCCCCCCCCCHH
Q ss_conf             977786059999999887488989788532300000027888756531112020377521-----001102343456827
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV-----TIAALIGGGLQVLPG   75 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~-----~~~~l~gg~~~~~pG   75 (186)
T Consensus         8 ~~GPsGvGKT~lAk~la~~l~~~~------~~~i~~dm~------------e~~~~~~v~~l~g~~~gyvg~~~~G~l~~   69 (168)
T pfam07724         8 FLGPTGVGKTELAKALAELLFGDE------RALIRIDMS------------EYMEEHSVSRLIGAPPGYVGYEEGGQLTE   69 (168)
T ss_pred             EECCCCCCHHHHHHHHHHHHCCCC------CCEEEECCC------------CCCCHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf             889899899999999999967985------344885575------------65425699987058998726242650789


Q ss_pred             HHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCC---CCC-CCCCCCCCCHH
Q ss_conf             99827998899803878598899999999971952301003078984701567522746588---788-98876438999
Q gi|254781026|r   76 EDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCG---MSN-KDENVCIRGPR  151 (186)
Q Consensus        76 ~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG---~~~-~~~~~c~c~~~  151 (186)
T Consensus        70 ~v~~~p~~VillDEIeKa~~~V~~~LL~ild~g~~~d~~g~-~v~~-~n~i~i~Tsn~g~~~~~~~~~~~~~~~~~~~~~  147 (168)
T pfam07724        70 AVRRKPYSIVLIDEIEKAHPGVQNDLLQILEGGTLTDKQGR-KVDF-RNTLFIMTGNFGSEKISDASRLGKSPDYELLKE  147 (168)
T ss_pred             HHHHCCCCEEEEHHHHHHCHHHHHHHHHHCCCCCEECCCCC-EEEC-CCEEEEECCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf             99838984898657766589999999987058706369996-7844-647999768737299998630467854799999


Q ss_pred             HHH-HHHHHCCHHHHHCCCEE
Q ss_conf             999-99851224321004259
Q gi|254781026|r  152 CAT-EYQARISGPLMDRIDIR  171 (186)
Q Consensus       152 ~~~-~Y~~rls~plldR~Dl~  171 (186)
T Consensus       148 ~~~~~~~~~f~PEflnRid~i  168 (168)
T pfam07724       148 LVMDLLKKGFIPEFLGRLPII  168 (168)
T ss_pred             HHHHHHHCCCCHHHHCCCCCC
T ss_conf             999999869884673575839