HHsearch alignment for GI: 254781026 and conserved domain: pfam07724
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.52 E-value=2.9e-14 Score=104.48 Aligned_cols=151 Identities=18% Similarity=0.136 Sum_probs=84.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCC-----CHHHCCCCCCCCCHH
Q ss_conf 977786059999999887488989788532300000027888756531112020377521-----001102343456827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV-----TIAALIGGGLQVLPG 75 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~-----~~~~l~gg~~~~~pG 75 (186)
T Consensus 8 ~~GPsGvGKT~lAk~la~~l~~~~------~~~i~~dm~------------e~~~~~~v~~l~g~~~gyvg~~~~G~l~~ 69 (168)
T pfam07724 8 FLGPTGVGKTELAKALAELLFGDE------RALIRIDMS------------EYMEEHSVSRLIGAPPGYVGYEEGGQLTE 69 (168)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCC------CCEEEECCC------------CCCCHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 889899899999999999967985------344885575------------65425699987058998726242650789
Q ss_pred HHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCC---CCC-CCCCCCCCCHH
Q ss_conf 99827998899803878598899999999971952301003078984701567522746588---788-98876438999
Q gi|254781026|r 76 EDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCG---MSN-KDENVCIRGPR 151 (186)
Q Consensus 76 ~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG---~~~-~~~~~c~c~~~ 151 (186)
T Consensus 70 ~v~~~p~~VillDEIeKa~~~V~~~LL~ild~g~~~d~~g~-~v~~-~n~i~i~Tsn~g~~~~~~~~~~~~~~~~~~~~~ 147 (168)
T pfam07724 70 AVRRKPYSIVLIDEIEKAHPGVQNDLLQILEGGTLTDKQGR-KVDF-RNTLFIMTGNFGSEKISDASRLGKSPDYELLKE 147 (168)
T ss_pred HHHHCCCCEEEEHHHHHHCHHHHHHHHHHCCCCCEECCCCC-EEEC-CCEEEEECCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf 99838984898657766589999999987058706369996-7844-647999768737299998630467854799999
Q ss_pred HHH-HHHHHCCHHHHHCCCEE
Q ss_conf 999-99851224321004259
Q gi|254781026|r 152 CAT-EYQARISGPLMDRIDIR 171 (186)
Q Consensus 152 ~~~-~Y~~rls~plldR~Dl~ 171 (186)
T Consensus 148 ~~~~~~~~~f~PEflnRid~i 168 (168)
T pfam07724 148 LVMDLLKKGFIPEFLGRLPII 168 (168)
T ss_pred HHHHHHHCCCCHHHHCCCCCC
T ss_conf 999999869884673575839