HHsearch alignment for GI: 254781026 and conserved domain: pfam07728
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.83 E-value=1.5e-20 Score=141.34 Aligned_cols=128 Identities=26% Similarity=0.365 Sum_probs=92.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCC-CCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHH
Q ss_conf 97778605999999988748898978853230000002788-87565311120203775210011023434568279982
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHS-SHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSL 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~-~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~l 79 (186)
T Consensus 4 l~Gp~G~GKT~la~~la~~l~~~~~---------~~i~~~~~~~~~dl~G------------~~~~~~~~~~~~~g~l~~ 62 (139)
T pfam07728 4 LVGPPGTGKSELAERLAAALSNRPV---------FYVQLTRDTTEEDLKG------------RRNIANGTTSWVDGPLVR 62 (139)
T ss_pred EECCCCCHHHHHHHHHHHHCCCCCC---------HHHCCCCCCCHHHCCC------------CEECCCCCEEEECCHHHC
T ss_conf 9989975699999999998079831---------1121465565222057------------342379935781551410
Q ss_pred C--CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEEC-----CCEEEEEECCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 7--998899803878598899999999971952301003078984-----701567522746588788988764389999
Q gi|254781026|r 80 A--HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYP-----SRIQLIAAMNPCRCGMSNKDENVCIRGPRC 152 (186)
Q Consensus 80 A--h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~P-----a~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~ 152 (186)
T Consensus 63 a~~~g~vl~lDEin~a~~~v~~~L~~~le~~~~~~~~~~~~~~~~~~~~~~~f~viaT~N~~---~~g~----------- 128 (139)
T pfam07728 63 AAREGEIAVLDEINRANPDVLNSLLSLLDERRLLLPEGGELVKVAPDDFAKRFRLIATMNPL---DRGL----------- 128 (139)
T ss_pred CCCCCCEEEECCHHHCCHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCEEEEEEECCC---CCCC-----------
T ss_conf 10128689963434489999999999974896983689727336666789996999975896---5478-----------
Q ss_pred HHHHHHHCCHHHHHCC
Q ss_conf 9999851224321004
Q gi|254781026|r 153 ATEYQARISGPLMDRI 168 (186)
Q Consensus 153 ~~~Y~~rls~plldR~ 168 (186)
T Consensus 129 -----~~l~~Al~~RF 139 (139)
T pfam07728 129 -----NELSPALRSRF 139 (139)
T ss_pred -----CCCCHHHHCCC
T ss_conf -----00998997509