HHsearch alignment for GI: 254781026 and conserved domain: pfam07728

>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.83  E-value=1.5e-20  Score=141.34  Aligned_cols=128  Identities=26%  Similarity=0.365  Sum_probs=92.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCC-CCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHH
Q ss_conf             97778605999999988748898978853230000002788-87565311120203775210011023434568279982
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHS-SHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSL   79 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~-~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~l   79 (186)
T Consensus         4 l~Gp~G~GKT~la~~la~~l~~~~~---------~~i~~~~~~~~~dl~G------------~~~~~~~~~~~~~g~l~~   62 (139)
T pfam07728         4 LVGPPGTGKSELAERLAAALSNRPV---------FYVQLTRDTTEEDLKG------------RRNIANGTTSWVDGPLVR   62 (139)
T ss_pred             EECCCCCHHHHHHHHHHHHCCCCCC---------HHHCCCCCCCHHHCCC------------CEECCCCCEEEECCHHHC
T ss_conf             9989975699999999998079831---------1121465565222057------------342379935781551410


Q ss_pred             C--CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEEC-----CCEEEEEECCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             7--998899803878598899999999971952301003078984-----701567522746588788988764389999
Q gi|254781026|r   80 A--HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYP-----SRIQLIAAMNPCRCGMSNKDENVCIRGPRC  152 (186)
Q Consensus        80 A--h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~P-----a~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~  152 (186)
T Consensus        63 a~~~g~vl~lDEin~a~~~v~~~L~~~le~~~~~~~~~~~~~~~~~~~~~~~f~viaT~N~~---~~g~-----------  128 (139)
T pfam07728        63 AAREGEIAVLDEINRANPDVLNSLLSLLDERRLLLPEGGELVKVAPDDFAKRFRLIATMNPL---DRGL-----------  128 (139)
T ss_pred             CCCCCCEEEECCHHHCCHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCEEEEEEECCC---CCCC-----------
T ss_conf             10128689963434489999999999974896983689727336666789996999975896---5478-----------


Q ss_pred             HHHHHHHCCHHHHHCC
Q ss_conf             9999851224321004
Q gi|254781026|r  153 ATEYQARISGPLMDRI  168 (186)
Q Consensus       153 ~~~Y~~rls~plldR~  168 (186)
T Consensus       129 -----~~l~~Al~~RF  139 (139)
T pfam07728       129 -----NELSPALRSRF  139 (139)
T ss_pred             -----CCCCHHHHCCC
T ss_conf             -----00998997509