HHsearch alignment for GI: 254781026 and conserved domain: pfam08298
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.00 E-value=1.2e-05 Score=53.80 Aligned_cols=83 Identities=19% Similarity=0.239 Sum_probs=62.6
Q ss_pred HHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 27998279988998038785988999999999719523010030789847015675227465887889887643899999
Q gi|254781026|r 74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCA 153 (186)
Q Consensus 74 pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~ 153 (186)
T Consensus 226 ~G~l~~aNrGl~efvE~~K~~~~~L~~lL~atQE~~i~~~~--~~~~i~~D~vIiahsNe~E~~~f~------------- 290 (358)
T pfam08298 226 SGALNRANQGLMEFVEMFKAPIKVLHPLLTATQEGNYNSTE--KFSAIPFDGIILAHSNESEWNSFK------------- 290 (358)
T ss_pred CCCEECCCCCCEEEHHHHCCCHHHHHHHHCCCCCCCCCCCC--CCCCEECCEEEECCCCHHHHHHHH-------------
T ss_conf 77000035775540987618299999985221246224778--756033142687689849999874-------------
Q ss_pred HHHHHHCCHHHHHCCCEEEECC
Q ss_conf 9998512243210042599838
Q gi|254781026|r 154 TEYQARISGPLMDRIDIRIAVP 175 (186)
Q Consensus 154 ~~Y~~rls~plldR~Dl~v~~~ 175 (186)
T Consensus 291 ---~~~~~eA~~dR~~~-v~vP 308 (358)
T pfam08298 291 ---SNKNNEAFLDRIVV-IKVP 308 (358)
T ss_pred ---CCCCCHHHHCCEEE-EECC
T ss_conf ---48643466563799-9676