HHsearch alignment for GI: 254781026 and conserved domain: pfam08298

>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.00  E-value=1.2e-05  Score=53.80  Aligned_cols=83  Identities=19%  Similarity=0.239  Sum_probs=62.6

Q ss_pred             HHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             27998279988998038785988999999999719523010030789847015675227465887889887643899999
Q gi|254781026|r   74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCA  153 (186)
Q Consensus        74 pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~  153 (186)
T Consensus       226 ~G~l~~aNrGl~efvE~~K~~~~~L~~lL~atQE~~i~~~~--~~~~i~~D~vIiahsNe~E~~~f~-------------  290 (358)
T pfam08298       226 SGALNRANQGLMEFVEMFKAPIKVLHPLLTATQEGNYNSTE--KFSAIPFDGIILAHSNESEWNSFK-------------  290 (358)
T ss_pred             CCCEECCCCCCEEEHHHHCCCHHHHHHHHCCCCCCCCCCCC--CCCCEECCEEEECCCCHHHHHHHH-------------
T ss_conf             77000035775540987618299999985221246224778--756033142687689849999874-------------


Q ss_pred             HHHHHHCCHHHHHCCCEEEECC
Q ss_conf             9998512243210042599838
Q gi|254781026|r  154 TEYQARISGPLMDRIDIRIAVP  175 (186)
Q Consensus       154 ~~Y~~rls~plldR~Dl~v~~~  175 (186)
T Consensus       291 ---~~~~~eA~~dR~~~-v~vP  308 (358)
T pfam08298       291 ---SNKNNEAFLDRIVV-IKVP  308 (358)
T ss_pred             ---CCCCCHHHHCCEEE-EECC
T ss_conf             ---48643466563799-9676