HHsearch alignment for GI: 254781026 and conserved domain: smart00350
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.98 E-value=3.2e-32 Score=209.78 Aligned_cols=145 Identities=23% Similarity=0.326 Sum_probs=116.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
T Consensus 241 LvGDPGtgKSqlLk~~~~iaprs-----------vytsG~gsS~aGLTa----------av~rd~~~ge~~leaGALVlA 299 (509)
T smart00350 241 LLGDPGTAKSQLLKYVEKTAPRA-----------VYTTGKGSSAVGLTA----------AVTRDPETREFTLEGGALVLA 299 (509)
T ss_pred EECCCCCCHHHHHHHHHHHCCCE-----------EEEECCCCCCCCCEE----------EEEECCCCCCEEECCCCEECC
T ss_conf 84699823629999999858860-----------687344455577068----------999817888378725641205
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
T Consensus 300 D~GiccIDEfdKm~~~dr~alhEaMEQQtisiaKaGi~~tL~aR~sVlAAaNP~~-g~yd~~~-----s~----~eni~l 369 (509)
T smart00350 300 DNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIG-GRYDPKL-----TP----EENIDL 369 (509)
T ss_pred CCCEEEEEEHHHCCHHHHHHHHHHHHHCEEEEECCCEEEEEECCCEEEEEECCCC-CCCCCCC-----CH----HHHCCC
T ss_conf 6754785213207877899999999748778743751799855735998655655-6378889-----99----994689
Q ss_pred CHHHHHCCCEEEECCC
Q ss_conf 2432100425998388
Q gi|254781026|r 161 SGPLMDRIDIRIAVPS 176 (186)
Q Consensus 161 s~plldR~Dl~v~~~~ 176 (186)
T Consensus 370 ~~~LLSRFDLIf~l~D 385 (509)
T smart00350 370 PAPILSRFDLLFVVLD 385 (509)
T ss_pred CHHHHHHCCEEEEEEC
T ss_conf 8035410238999615