HHsearch alignment for GI: 254781026 and conserved domain: smart00382

>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.69  E-value=1.4e-08  Score=71.19  Aligned_cols=137  Identities=27%  Similarity=0.228  Sum_probs=77.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf             97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA   80 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA   80 (186)
T Consensus         7 l~G~~GsGKTtl~~~la~~~~~~~-------~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~   74 (148)
T smart00382        7 IVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLDQLL----LIIVGGKKASGSGELRLR-LALALA   74 (148)
T ss_pred             EECCCCHHHHHHHHHHHHHHCCCC-------CCEEEEEHHHHHHHHHHHHH----HHHHCCCCCCCCHHHHHH-HHHHHH
T ss_conf             999997029999999998726689-------96899875998988898765----300011221051999999-999999


Q ss_pred             CC---CEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             99---889980387859889999999997195230100307898470156752274658878898876438999999998
Q gi|254781026|r   81 HN---GVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQ  157 (186)
Q Consensus        81 h~---GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~  157 (186)
T Consensus        75 ~~~~~~viiiDei~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~vi~~~n~-----~~~----------------  128 (148)
T smart00382       75 RKLKPDVLILDEITSLLDAEQEALLLLLEE-----LRLLLLLKSEKNLTVILTTND-----EKD----------------  128 (148)
T ss_pred             HHCCCCEEEEECCHHHCCCCCHHHHHHHHH-----HHHHCCCCCCCCEEEEEEECC-----CCC----------------
T ss_conf             844998999827502147620799999999-----998517657899899995699-----522----------------


Q ss_pred             HHCCHHHHHCCCEEEECCC
Q ss_conf             5122432100425998388
Q gi|254781026|r  158 ARISGPLMDRIDIRIAVPS  176 (186)
Q Consensus       158 ~rls~plldR~Dl~v~~~~  176 (186)
T Consensus       129 -~~~~~~~~~~~~~~~~~~  146 (148)
T smart00382      129 -LGPALLRRRFDRRIVLLL  146 (148)
T ss_pred             -CCHHHHCCCCCEEEEEEC
T ss_conf             -498770744787999828