HHsearch alignment for GI: 254781026 and conserved domain: smart00763

>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.00  E-value=9.2e-06  Score=54.59  Aligned_cols=83  Identities=22%  Similarity=0.169  Sum_probs=62.3

Q ss_pred             HHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             27998279988998038785988999999999719523010030789847015675227465887889887643899999
Q gi|254781026|r   74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCA  153 (186)
Q Consensus        74 pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~  153 (186)
T Consensus       229 ~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqE~~vk~~--~~~~~~~~d~viia~sNe~E~~~f~~------------  294 (361)
T smart00763      229 DGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGT--GGFAMIPIDGLIIAHSNESEWQRFKS------------  294 (361)
T ss_pred             CCHHHHCCCCCEEHHHHHHCCHHHHHHHHCCCCCCEECCC--CCCCCCCCCEEEEECCCHHHHHHHHC------------
T ss_conf             5345440476000487751759999998420103604178--86565324515882498599987644------------


Q ss_pred             HHHHHHCCHHHHHCCCEEEECC
Q ss_conf             9998512243210042599838
Q gi|254781026|r  154 TEYQARISGPLMDRIDIRIAVP  175 (186)
Q Consensus       154 ~~Y~~rls~plldR~Dl~v~~~  175 (186)
T Consensus       295 ----~~~~ea~~dR~~~i-~vP  311 (361)
T smart00763      295 ----NKKNEALLDRIIKV-KVP  311 (361)
T ss_pred             ----CCCCHHHHCCEEEE-ECC
T ss_conf             ----84105555027998-687