HHsearch alignment for GI: 254781026 and conserved domain: smart00763
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.00 E-value=9.2e-06 Score=54.59 Aligned_cols=83 Identities=22% Similarity=0.169 Sum_probs=62.3
Q ss_pred HHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 27998279988998038785988999999999719523010030789847015675227465887889887643899999
Q gi|254781026|r 74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCA 153 (186)
Q Consensus 74 pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~ 153 (186)
T Consensus 229 ~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqE~~vk~~--~~~~~~~~d~viia~sNe~E~~~f~~------------ 294 (361)
T smart00763 229 DGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGT--GGFAMIPIDGLIIAHSNESEWQRFKS------------ 294 (361)
T ss_pred CCHHHHCCCCCEEHHHHHHCCHHHHHHHHCCCCCCEECCC--CCCCCCCCCEEEEECCCHHHHHHHHC------------
T ss_conf 5345440476000487751759999998420103604178--86565324515882498599987644------------
Q ss_pred HHHHHHCCHHHHHCCCEEEECC
Q ss_conf 9998512243210042599838
Q gi|254781026|r 154 TEYQARISGPLMDRIDIRIAVP 175 (186)
Q Consensus 154 ~~Y~~rls~plldR~Dl~v~~~ 175 (186)
T Consensus 295 ----~~~~ea~~dR~~~i-~vP 311 (361)
T smart00763 295 ----NKKNEALLDRIIKV-KVP 311 (361)
T ss_pred ----CCCCHHHHCCEEEE-ECC
T ss_conf ----84105555027998-687