RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781026|ref|YP_003065439.1| hypothetical protein
CLIBASIA_04640 [Candidatus Liberibacter asiaticus str. psy62]
(186 letters)
>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI.
Magnesium-chelatase is a three-component enzyme that
catalyses the insertion of Mg2+ into protoporphyrin IX.
This is the first unique step in the synthesis of
(bacterio)chlorophyll. Due to this, it is thought that
Mg-chelatase has an important role in channelling inter-
mediates into the (bacterio)chlorophyll branch in
response to conditions suitable for photosynthetic
growth. ChlI and BchD have molecular weight between
38-42 kDa.
Length = 207
Score = 278 bits (714), Expect = 6e-76
Identities = 97/175 (55%), Positives = 126/175 (72%), Gaps = 1/175 (0%)
Query: 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV 60
MIGPPG+ K+MLA LP IL PL+ +E+LEV+ I+S++G I+ RPFR+PHHS
Sbjct: 27 MIGPPGSGKTMLAKRLPGILPPLTEQEALEVTAIHSVAGLGGDG-GLIRRRPFRAPHHSA 85
Query: 61 TIAALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKIS 120
+ AAL+GGG PGE SLAHNGVLFLDE+PEFS + L +LRQPLE GE I+RA K++
Sbjct: 86 SAAALVGGGSIPRPGEISLAHNGVLFLDELPEFSRRVLESLRQPLEDGEITISRARAKVT 145
Query: 121 YPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVP 175
+P+R QL+AAMNPC CG + C PR Y +R+SGPL+DRID+++ VP
Sbjct: 146 FPARFQLVAAMNPCPCGYLGDPDKRCRCTPRQIRRYLSRLSGPLLDRIDLQVEVP 200
>gnl|CDD|30951 COG0606, COG0606, Predicted ATPase with chaperone activity
[Posttranslational modification, protein turnover,
chaperones].
Length = 490
Score = 245 bits (628), Expect = 4e-66
Identities = 94/176 (53%), Positives = 121/176 (68%)
Query: 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV 60
++GPPG K+MLAS LP +L PLS+ E+LEVS I+S++G +RPFR+PHHS
Sbjct: 203 LVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSA 262
Query: 61 TIAALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKIS 120
++AAL+GGG PGE SLAHNGVLFLDE+PEF L ALR+PLE G+ II+RA K++
Sbjct: 263 SLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVT 322
Query: 121 YPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVPS 176
YP+R QL+AAMNPC CG C PR Y ++SGP +DRID+ + VP
Sbjct: 323 YPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPR 378
>gnl|CDD|31432 COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism].
Length = 423
Score = 50.7 bits (121), Expect = 2e-07
Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 23/117 (19%)
Query: 59 SVTIAALIGGGLQVL-PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANR 117
S+ I + G + PG + A+ G+L++DE+ ++AL G + R
Sbjct: 121 SLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGI 180
Query: 118 KISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAV 174
I +P+R LI MNP + L+DR + +
Sbjct: 181 SIRHPARFLLIGTMNPEE----------------------GELRPQLLDRFGLEVDT 215
>gnl|CDD|31058 COG0714, COG0714, MoxR-like ATPases [General function prediction
only].
Length = 329
Score = 39.3 bits (91), Expect = 7e-04
Identities = 43/180 (23%), Positives = 62/180 (34%), Gaps = 45/180 (25%)
Query: 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHH-- 58
+ GPPG K++LA +L +L + + IQ P P
Sbjct: 48 LEGPPGVGKTLLAR---------ALARALGLPFVR------------IQCTPDLLPSDLL 86
Query: 59 ---SVTIAALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARA 115
+ L G + +PG A +L LDEI P+ NAL + LE + +
Sbjct: 87 GTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPG- 145
Query: 116 NRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVP 175
I P +IA NP G T + L+DR +RI V
Sbjct: 146 LTTIRLPPPFIVIATQNP---------------GEYEGTY---PLPEALLDRFLLRIYVD 187
>gnl|CDD|33622 COG3829, RocR, Transcriptional regulator containing PAS, AAA-type
ATPase, and DNA-binding domains [Transcription / Signal
transduction mechanisms].
Length = 560
Score = 39.1 bits (91), Expect = 7e-04
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132
PG LA+ G LFLDEI E L + L+ E I R P +++IAA N
Sbjct: 333 PGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKE--IERVGGTKPIPVDVRIIAATN 389
>gnl|CDD|35701 KOG0480, KOG0480, KOG0480, DNA replication licensing factor, MCM6
component [Replication, recombination and repair].
Length = 764
Score = 37.2 bits (86), Expect = 0.003
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGM 138
LA NG+ +DE + + A+ + +E IA+A + +R ++AA NP G
Sbjct: 440 LADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANP-VGGH 498
Query: 139 SNKDENVCIRGPRCATEYQARISGPLMDRIDI 170
++ + + +S P+M R D+
Sbjct: 499 YDRKKTL---------RENINMSAPIMSRFDL 521
>gnl|CDD|31434 COG1241, MCM2, Predicted ATPase involved in replication control,
Cdc46/Mcm family [DNA replication, recombination, and
repair].
Length = 682
Score = 36.5 bits (84), Expect = 0.004
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGM 138
LA GV +DE + + + A+ + +E IA+A + +R ++AA NP + G
Sbjct: 381 LADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANP-KFGR 439
Query: 139 SNKDENVCIRGPRCATEYQARISGPLMDRIDI 170
+ + V + PL+ R D+
Sbjct: 440 YDPKKTV---------AENINLPAPLLSRFDL 462
>gnl|CDD|32386 COG2204, AtoC, Response regulator containing CheY-like receiver,
AAA-type ATPase, and DNA-binding domains [Signal
transduction mechanisms].
Length = 464
Score = 35.7 bits (82), Expect = 0.008
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 68 GGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQL 127
G + G A+ G LFLDEI E + L + L+ E N+ I +++
Sbjct: 222 GAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPI--KVDVRI 279
Query: 128 IAAMN 132
IAA N
Sbjct: 280 IAATN 284
>gnl|CDD|31414 COG1221, PspF, Transcriptional regulators containing an AAA-type
ATPase domain and a DNA-binding domain [Transcription /
Signal transduction mechanisms].
Length = 403
Score = 34.6 bits (79), Expect = 0.016
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132
A+ G LFLDEI P+ L + LE GE R P ++LI A
Sbjct: 171 QANGGTLFLDEIHRLPPEGQEKLLRVLEEGEY--RRVGGSQPRPVDVRLICATT 222
>gnl|CDD|143926 pfam00158, Sigma54_activat, Sigma-54 interaction domain.
Length = 168
Score = 34.7 bits (81), Expect = 0.017
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIAR--ANRKISYPSRIQLIAAMN 132
LA G LFLDEI E + L + L+ GE R + I +++IAA N
Sbjct: 91 LADGGTLFLDEIGELPLELQAKLLRVLQEGE--FERVGGTKPI--KVDVRIIAATN 142
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases..
Length = 151
Score = 34.4 bits (79), Expect = 0.018
Identities = 41/182 (22%), Positives = 57/182 (31%), Gaps = 60/182 (32%)
Query: 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV 60
+ GPPG K+ LA + F PF + S
Sbjct: 24 LYGPPGTGKTTLARAI--------------------------ANELFRPGAPFLYLNASD 57
Query: 61 TIAALIGGGLQVLPGEDSL------AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIAR 114
+ L+ L L A GVLF+DEI S NAL + LET
Sbjct: 58 LLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETL------ 111
Query: 115 ANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAV 174
N +++I A +N+ + L DR+DIRI +
Sbjct: 112 -NDLRIDRENVRVIGA--------TNRPL-------------LGDLDRALYDRLDIRIVI 149
Query: 175 PS 176
P
Sbjct: 150 PL 151
>gnl|CDD|176899 cd08890, SRPBCC_PITPNC1_like, Lipid-binding SRPBCC domain of
mammalian PITPNC1,and related proteins (Class IIB
PITPs). This subgroup includes the N-terminal SRPBCC
(START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain of
mammalian Class IIB phosphatidylinositol transfer
protein (PITP), PITPNC1/RdgBbeta, and related proteins.
These are metazoan proteins belonging to the PITP
family of lipid transfer proteins, and to the SRPBCC
domain superfamily of proteins that bind hydrophobic
ligands. SRPBCC domains have a deep hydrophobic
ligand-binding pocket. In vitro, PITPs bind
phosphatidylinositol (PtdIns), as well as
phosphatidylcholine (PtdCho) but with a lower affinity.
They transfer these lipids from one membrane
compartment to another. The cellular roles of PITPs
include inositol lipid signaling, PtdIns metabolism,
and membrane trafficking. Mammalian PITPNC1 contains an
amino-terminal SRPBCC PITP-like domain and a short
carboxyl-terminal domain. It is a cytoplasmic protein,
and is ubiquitously expressed. It can transfer
phosphatidylinositol (PtdIns) in vitro with a similar
ability to other PITPs.
Length = 250
Score = 34.4 bits (79), Expect = 0.019
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 9/47 (19%)
Query: 19 ILLPLSLEESLEVSMIYSISGHSSHEYS-------FIQNRPFRSPHH 58
I +PL++EE + +Y IS HS HE S +QN P P H
Sbjct: 7 ICMPLTVEE-YRIGQLYMISRHS-HEQSERGEGVEVVQNEPCEDPEH 51
>gnl|CDD|35699 KOG0478, KOG0478, KOG0478, DNA replication licensing factor, MCM4
component [Replication, recombination and repair].
Length = 804
Score = 34.2 bits (78), Expect = 0.022
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCR 135
L+ NG+ +DE + S T + L + +E IA+A S +R ++AA NP R
Sbjct: 524 LSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIR 580
>gnl|CDD|33404 COG3604, FhlA, Transcriptional regulator containing GAF, AAA-type
ATPase, and DNA binding domains [Transcription / Signal
transduction mechanisms].
Length = 550
Score = 33.4 bits (76), Expect = 0.037
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132
G LA G LFLDEI E L + L+ GE +R I R+ IAA N
Sbjct: 310 RGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRV--IAATN 366
>gnl|CDD|35700 KOG0479, KOG0479, KOG0479, DNA replication licensing factor, MCM3
component [Replication, recombination and repair].
Length = 818
Score = 33.0 bits (75), Expect = 0.055
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133
LA GV+ +DE + S A+ + +E IA+A S +R ++AA NP
Sbjct: 396 LADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANP 450
>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine
Kinases, Met and Ron. Protein Tyrosine Kinase (PTK)
family; Met and Ron; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Met and
Ron are receptor tyr kinases (RTKs) composed of an
alpha-beta heterodimer. The extracellular alpha chain is
disulfide linked to the beta chain, which contains an
extracellular ligand-binding region with a sema domain,
a PSI domain and four IPT repeats, a transmembrane
segment, and an intracellular catalytic domain. Binding
to their ligands leads to receptor dimerization,
autophosphorylation, activation, and intracellular
signaling. Met binds to the ligand, hepatocyte growth
factor/scatter factor (HGF/SF), and is also called the
HGF receptor. HGF/Met signaling plays a role in growth,
transformation, cell motility, invasion, metastasis,
angiogenesis, wound healing, and tissue regeneration.
Aberrant expression of Met through mutations or gene
amplification is associated with many human cancers
including hereditary papillary renal and gastric
carcinomas. The ligand for Ron is macrophage stimulating
protein (MSP). Ron signaling is important in regulating
cell motility, adhesion, proliferation, and apoptosis.
Aberrant Ron expression is implicated in tumorigenesis
and metastasis.
Length = 262
Score = 32.1 bits (73), Expect = 0.092
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 15/71 (21%)
Query: 10 SMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGG 69
S+L CLPS PL V + Y G + FI RS H+ T+ LIG G
Sbjct: 60 SLLGICLPSEGSPL-------VVLPYMKHGDLRN---FI-----RSETHNPTVKDLIGFG 104
Query: 70 LQVLPGEDSLA 80
LQV G + LA
Sbjct: 105 LQVAKGMEYLA 115
>gnl|CDD|144183 pfam00493, MCM, MCM2/3/5 family.
Length = 327
Score = 31.4 bits (72), Expect = 0.17
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGM 138
LA GV +DE + + + A+ + +E IA+A + +R ++AA NP G
Sbjct: 119 LADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGIVATLNARCSVLAAANP-IFGR 177
Query: 139 SNKDENVCIRGPRCATEYQARISGPLMDRIDI 170
+ ++V + PL+ R D+
Sbjct: 178 YDPKKSV---------AENINLPPPLLSRFDL 200
>gnl|CDD|33094 COG3284, AcoR, Transcriptional activator of acetoin/glycerol
metabolism [Secondary metabolites biosynthesis,
transport, and catabolism / Transcription].
Length = 606
Score = 31.0 bits (70), Expect = 0.19
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132
A G LFLDEI + + L + L+ G R I++IAA +
Sbjct: 405 QADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRI---KVDIRVIAATH 455
>gnl|CDD|31266 COG1067, LonB, Predicted ATP-dependent protease [Posttranslational
modification, protein turnover, chaperones].
Length = 647
Score = 29.9 bits (67), Expect = 0.44
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 71 QVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECII--------ARANRKISYP 122
+V PG A+ GVL +DEI + L + L E I R S P
Sbjct: 215 RVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVP 274
Query: 123 SRIQLIAAMNPC 134
++LI A N
Sbjct: 275 LDLKLILAGNRE 286
>gnl|CDD|35703 KOG0482, KOG0482, KOG0482, DNA replication licensing factor, MCM7
component [Replication, recombination and repair].
Length = 721
Score = 29.2 bits (65), Expect = 0.65
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGM 138
LA G+ +DE + A+ + +E IA+A + +R ++AA NP G
Sbjct: 437 LADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAY-GR 495
Query: 139 SNKDENVCIRGPRCATEYQARISGPLMDRIDI 170
N PR + E + L+ R D+
Sbjct: 496 YN---------PRRSPEQNINLPAALLSRFDL 518
>gnl|CDD|35702 KOG0481, KOG0481, KOG0481, DNA replication licensing factor, MCM5
component [Replication, recombination and repair].
Length = 729
Score = 28.8 bits (64), Expect = 0.83
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133
LA GV+ +DE + A+ + +E IA+A + SR ++AA NP
Sbjct: 426 LADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANP 480
>gnl|CDD|143797 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 27.6 bits (62), Expect = 2.0
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 27/95 (28%)
Query: 84 VLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRI--QLIAAMNPCRCGMSNK 141
V+F+DEI + +R + S R+ QL+ ++ G ++
Sbjct: 60 VIFIDEIDALAG-----------------SRGSGGDSESRRVVNQLLTELD----GFTSS 98
Query: 142 DENVCIRGPRCATEYQARISGPLM-DRIDIRIAVP 175
V + AT ++ L+ R D I P
Sbjct: 99 LSKVIVIA---ATNRPDKLDPALLRGRFDRIIEFP 130
>gnl|CDD|176857 cd07815, SRPBCC_PITP, Lipid-binding SRPBCC domain of Class I and
Class II Phosphatidylinositol Transfer Proteins. This
family includes the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of the
phosphatidylinositol transfer protein (PITP) family of
lipid transfer proteins. This family of proteins
includes Class 1 PITPs (PITPNA/PITPalpha and
PITPNB/PITPbeta, Drosophila vibrator and related
proteins), Class IIA PITPs (PITPNM1/PITPalphaI/Nir2,
PITPNM2/PITPalphaII/Nir3, Drosophila RdgB, and related
proteins), and Class IIB PITPs (PITPNC1/RdgBbeta and
related proteins). The PITP family belongs to the
SRPBCC domain superfamily of proteins that bind
hydrophobic ligands. SRPBCC domains have a deep
hydrophobic ligand-binding pocket. In vitro, PITPs bind
phosphatidylinositol (PtdIns), as well as
phosphatidylcholine (PtdCho) but with a lower affinity.
They transfer these lipids from one membrane
compartment to another. The cellular roles of PITPs
include inositol lipid signaling, PtdIns metabolism,
and membrane trafficking. Class III PITPs, exemplified
by the Sec14p family, are found in yeast and plants but
are unrelated in sequence and structure to Class I and
II PITPs and belong to a different superfamily.
Length = 251
Score = 27.3 bits (61), Expect = 2.5
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 19 ILLPLSLEESLEVSMIYSISGHSSHEYS------FIQNRPFRSPHH 58
I+LPL++EE ++ +Y ++ S E ++N P+ +
Sbjct: 7 IVLPLTVEE-YQIGQLYMVAKASKEETGSGEGVEVLKNEPYEDENG 51
>gnl|CDD|36491 KOG1277, KOG1277, KOG1277, Endosomal membrane proteins, EMP70
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 593
Score = 26.8 bits (59), Expect = 3.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 53 FRSPHHSVTIAALIGGGLQVL 73
FR P H + +A++G G Q+
Sbjct: 286 FRFPSHPLLFSAVLGSGAQLF 306
>gnl|CDD|33093 COG3283, TyrR, Transcriptional regulator of aromatic amino acids
metabolism [Transcription / Amino acid transport and
metabolism].
Length = 511
Score = 26.8 bits (59), Expect = 4.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 74 PGEDSLAHNGVLFLDEIPEFSPQ 96
G A+ G + LDEI E SP+
Sbjct: 286 KGFFEQANGGTVLLDEIGEMSPR 308
>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 305
Score = 26.6 bits (59), Expect = 4.2
Identities = 7/42 (16%), Positives = 10/42 (23%), Gaps = 7/42 (16%)
Query: 39 GHSSHEYSFIQNRPFRSPHHSVTIAAL-------IGGGLQVL 73
G SS E + F + + L L
Sbjct: 222 GSSSGEPAVFNPAAFVGGGGGRRLYTFFLYDGEPLAADLARL 263
>gnl|CDD|35698 KOG0477, KOG0477, KOG0477, DNA replication licensing factor, MCM2
component [Replication, recombination and repair].
Length = 854
Score = 26.1 bits (57), Expect = 5.3
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133
LA GV +DE + + Q ++ + +E I++A S +R +IAA NP
Sbjct: 544 LADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANP 598
>gnl|CDD|36057 KOG0839, KOG0839, KOG0839, RNA Methylase, SpoU family [RNA
processing and modification].
Length = 1477
Score = 26.1 bits (57), Expect = 6.1
Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 15/100 (15%)
Query: 15 CLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLP 74
CL S+ +V M Y ++ S + N F + + +
Sbjct: 95 CLRSVWH------KFQVWMSYRLNDLISENLKHLLNDNFGKKIAQPFVESFAAEQNANIK 148
Query: 75 GED------SLAHN--GVLFLDE-IPEFSPQTLNALRQPL 105
E+ SL H V DE S + L+ + PL
Sbjct: 149 HENLHLLILSLLHYLEVVYLFDECKNGASSKCLDFIIVPL 188
>gnl|CDD|35957 KOG0738, KOG0738, KOG0738, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 491
Score = 25.7 bits (56), Expect = 7.5
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 1 MIGPPGARKSMLASCLPS 18
M+GPPG K++LA + +
Sbjct: 250 MVGPPGTGKTLLAKAVAT 267
>gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 25.4 bits (55), Expect = 8.8
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 85 LFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQ----LIAAMNP 133
L LDEI S +TL + L E I + P RI L MNP
Sbjct: 639 LLLDEINLASEETLELIDGLLGKKESGILLSESGDLRPIRIHPGFRLFGCMNP 691
>gnl|CDD|37741 KOG2530, KOG2530, KOG2530, Members of tubulin/FtsZ family
[Cytoskeleton].
Length = 483
Score = 25.4 bits (55), Expect = 9.6
Identities = 26/124 (20%), Positives = 40/124 (32%), Gaps = 4/124 (3%)
Query: 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVT 61
+G + LA SI LP L S + ++S S + PF
Sbjct: 288 LGDLWETSAKLARAFDSITLPTRLISSSNLRQRDTLSYLGSKVITLGYALPFPLVTGQSL 347
Query: 62 IAALIGGGLQVLPGEDSLAHNGVL--FLDEIPEFSPQTLNALRQPLETGECIIARANRKI 119
L+ G VLP + S N L I + + +P + + I +
Sbjct: 348 EDTLVSSGSAVLPTQLSHKPNNCQSGVLRSIDDRGNLLHDHHYEPASSSKMIELYQHL-- 405
Query: 120 SYPS 123
PS
Sbjct: 406 YLPS 409
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.137 0.410
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,249,353
Number of extensions: 110168
Number of successful extensions: 339
Number of sequences better than 10.0: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 43
Length of query: 186
Length of database: 6,263,737
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,362,145
Effective search space: 427490210
Effective search space used: 427490210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)