RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781026|ref|YP_003065439.1| hypothetical protein
CLIBASIA_04640 [Candidatus Liberibacter asiaticus str. psy62]
         (186 letters)



>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI.
           Magnesium-chelatase is a three-component enzyme that
           catalyses the insertion of Mg2+ into protoporphyrin IX.
           This is the first unique step in the synthesis of
           (bacterio)chlorophyll. Due to this, it is thought that
           Mg-chelatase has an important role in channelling inter-
           mediates into the (bacterio)chlorophyll branch in
           response to conditions suitable for photosynthetic
           growth. ChlI and BchD have molecular weight between
           38-42 kDa.
          Length = 207

 Score =  278 bits (714), Expect = 6e-76
 Identities = 97/175 (55%), Positives = 126/175 (72%), Gaps = 1/175 (0%)

Query: 1   MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV 60
           MIGPPG+ K+MLA  LP IL PL+ +E+LEV+ I+S++G        I+ RPFR+PHHS 
Sbjct: 27  MIGPPGSGKTMLAKRLPGILPPLTEQEALEVTAIHSVAGLGGDG-GLIRRRPFRAPHHSA 85

Query: 61  TIAALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKIS 120
           + AAL+GGG    PGE SLAHNGVLFLDE+PEFS + L +LRQPLE GE  I+RA  K++
Sbjct: 86  SAAALVGGGSIPRPGEISLAHNGVLFLDELPEFSRRVLESLRQPLEDGEITISRARAKVT 145

Query: 121 YPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVP 175
           +P+R QL+AAMNPC CG     +  C   PR    Y +R+SGPL+DRID+++ VP
Sbjct: 146 FPARFQLVAAMNPCPCGYLGDPDKRCRCTPRQIRRYLSRLSGPLLDRIDLQVEVP 200


>gnl|CDD|30951 COG0606, COG0606, Predicted ATPase with chaperone activity
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 490

 Score =  245 bits (628), Expect = 4e-66
 Identities = 94/176 (53%), Positives = 121/176 (68%)

Query: 1   MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV 60
           ++GPPG  K+MLAS LP +L PLS+ E+LEVS I+S++G          +RPFR+PHHS 
Sbjct: 203 LVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSA 262

Query: 61  TIAALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKIS 120
           ++AAL+GGG    PGE SLAHNGVLFLDE+PEF    L ALR+PLE G+ II+RA  K++
Sbjct: 263 SLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVT 322

Query: 121 YPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVPS 176
           YP+R QL+AAMNPC CG        C   PR    Y  ++SGP +DRID+ + VP 
Sbjct: 323 YPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPR 378


>gnl|CDD|31432 COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism].
          Length = 423

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 23/117 (19%)

Query: 59  SVTIAALIGGGLQVL-PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANR 117
           S+ I   +  G +   PG  + A+ G+L++DE+       ++AL      G   + R   
Sbjct: 121 SLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGI 180

Query: 118 KISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAV 174
            I +P+R  LI  MNP                          +   L+DR  + +  
Sbjct: 181 SIRHPARFLLIGTMNPEE----------------------GELRPQLLDRFGLEVDT 215


>gnl|CDD|31058 COG0714, COG0714, MoxR-like ATPases [General function prediction
           only].
          Length = 329

 Score = 39.3 bits (91), Expect = 7e-04
 Identities = 43/180 (23%), Positives = 62/180 (34%), Gaps = 45/180 (25%)

Query: 1   MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHH-- 58
           + GPPG  K++LA          +L  +L +  +             IQ  P   P    
Sbjct: 48  LEGPPGVGKTLLAR---------ALARALGLPFVR------------IQCTPDLLPSDLL 86

Query: 59  ---SVTIAALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARA 115
              +     L  G  + +PG    A   +L LDEI    P+  NAL + LE  +  +   
Sbjct: 87  GTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPG- 145

Query: 116 NRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVP 175
              I  P    +IA  NP               G    T     +   L+DR  +RI V 
Sbjct: 146 LTTIRLPPPFIVIATQNP---------------GEYEGTY---PLPEALLDRFLLRIYVD 187


>gnl|CDD|33622 COG3829, RocR, Transcriptional regulator containing PAS, AAA-type
           ATPase, and DNA-binding domains [Transcription / Signal
           transduction mechanisms].
          Length = 560

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 74  PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132
           PG   LA+ G LFLDEI E        L + L+  E  I R       P  +++IAA N
Sbjct: 333 PGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKE--IERVGGTKPIPVDVRIIAATN 389


>gnl|CDD|35701 KOG0480, KOG0480, KOG0480, DNA replication licensing factor, MCM6
           component [Replication, recombination and repair].
          Length = 764

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 10/92 (10%)

Query: 79  LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGM 138
           LA NG+  +DE  +   +   A+ + +E     IA+A    +  +R  ++AA NP   G 
Sbjct: 440 LADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANP-VGGH 498

Query: 139 SNKDENVCIRGPRCATEYQARISGPLMDRIDI 170
            ++ + +              +S P+M R D+
Sbjct: 499 YDRKKTL---------RENINMSAPIMSRFDL 521


>gnl|CDD|31434 COG1241, MCM2, Predicted ATPase involved in replication control,
           Cdc46/Mcm family [DNA replication, recombination, and
           repair].
          Length = 682

 Score = 36.5 bits (84), Expect = 0.004
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 79  LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGM 138
           LA  GV  +DE  + + +   A+ + +E     IA+A    +  +R  ++AA NP + G 
Sbjct: 381 LADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANP-KFGR 439

Query: 139 SNKDENVCIRGPRCATEYQARISGPLMDRIDI 170
            +  + V              +  PL+ R D+
Sbjct: 440 YDPKKTV---------AENINLPAPLLSRFDL 462


>gnl|CDD|32386 COG2204, AtoC, Response regulator containing CheY-like receiver,
           AAA-type ATPase, and DNA-binding domains [Signal
           transduction mechanisms].
          Length = 464

 Score = 35.7 bits (82), Expect = 0.008
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 68  GGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQL 127
           G +    G    A+ G LFLDEI E   +    L + L+  E      N+ I     +++
Sbjct: 222 GAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPI--KVDVRI 279

Query: 128 IAAMN 132
           IAA N
Sbjct: 280 IAATN 284


>gnl|CDD|31414 COG1221, PspF, Transcriptional regulators containing an AAA-type
           ATPase domain and a DNA-binding domain [Transcription /
           Signal transduction mechanisms].
          Length = 403

 Score = 34.6 bits (79), Expect = 0.016
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 79  LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132
            A+ G LFLDEI    P+    L + LE GE    R       P  ++LI A  
Sbjct: 171 QANGGTLFLDEIHRLPPEGQEKLLRVLEEGEY--RRVGGSQPRPVDVRLICATT 222


>gnl|CDD|143926 pfam00158, Sigma54_activat, Sigma-54 interaction domain. 
          Length = 168

 Score = 34.7 bits (81), Expect = 0.017
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 79  LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIAR--ANRKISYPSRIQLIAAMN 132
           LA  G LFLDEI E   +    L + L+ GE    R    + I     +++IAA N
Sbjct: 91  LADGGTLFLDEIGELPLELQAKLLRVLQEGE--FERVGGTKPI--KVDVRIIAATN 142


>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
           cellular Activities) superfamily represents an ancient
           group of ATPases belonging to the ASCE (for additional
           strand, catalytic E) division of the P-loop NTPase fold.
           The ASCE division also includes ABC, RecA-like,
           VirD4-like, PilT-like, and SF1/2 helicases. Members of
           the AAA+ ATPases function as molecular chaperons, ATPase
           subunits of proteases, helicases, or nucleic-acid
           stimulated ATPases. The AAA+ proteins contain several
           distinct features in addition to the conserved
           alpha-beta-alpha core domain structure and the Walker A
           and B motifs of the P-loop NTPases..
          Length = 151

 Score = 34.4 bits (79), Expect = 0.018
 Identities = 41/182 (22%), Positives = 57/182 (31%), Gaps = 60/182 (32%)

Query: 1   MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV 60
           + GPPG  K+ LA  +                              F    PF   + S 
Sbjct: 24  LYGPPGTGKTTLARAI--------------------------ANELFRPGAPFLYLNASD 57

Query: 61  TIAALIGGGLQVLPGEDSL------AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIAR 114
            +  L+   L        L      A  GVLF+DEI   S    NAL + LET       
Sbjct: 58  LLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETL------ 111

Query: 115 ANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAV 174
            N        +++I A        +N+                  +   L DR+DIRI +
Sbjct: 112 -NDLRIDRENVRVIGA--------TNRPL-------------LGDLDRALYDRLDIRIVI 149

Query: 175 PS 176
           P 
Sbjct: 150 PL 151


>gnl|CDD|176899 cd08890, SRPBCC_PITPNC1_like, Lipid-binding SRPBCC domain of
          mammalian PITPNC1,and related proteins (Class IIB
          PITPs).  This subgroup includes the N-terminal SRPBCC
          (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain of
          mammalian Class IIB phosphatidylinositol transfer
          protein (PITP), PITPNC1/RdgBbeta, and related proteins.
          These are metazoan proteins belonging to the PITP
          family of lipid transfer proteins, and to the SRPBCC
          domain superfamily of proteins that bind hydrophobic
          ligands. SRPBCC domains have a deep hydrophobic
          ligand-binding pocket. In vitro, PITPs bind
          phosphatidylinositol (PtdIns), as well as
          phosphatidylcholine (PtdCho) but with a lower affinity.
          They transfer these lipids from one membrane
          compartment to another. The cellular roles of PITPs
          include inositol lipid signaling, PtdIns metabolism,
          and membrane trafficking. Mammalian PITPNC1 contains an
          amino-terminal SRPBCC PITP-like domain and a short
          carboxyl-terminal domain. It is a cytoplasmic protein,
          and is ubiquitously expressed. It can transfer
          phosphatidylinositol (PtdIns) in vitro with a similar
          ability to other PITPs.
          Length = 250

 Score = 34.4 bits (79), Expect = 0.019
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 9/47 (19%)

Query: 19 ILLPLSLEESLEVSMIYSISGHSSHEYS-------FIQNRPFRSPHH 58
          I +PL++EE   +  +Y IS HS HE S        +QN P   P H
Sbjct: 7  ICMPLTVEE-YRIGQLYMISRHS-HEQSERGEGVEVVQNEPCEDPEH 51


>gnl|CDD|35699 KOG0478, KOG0478, KOG0478, DNA replication licensing factor, MCM4
           component [Replication, recombination and repair].
          Length = 804

 Score = 34.2 bits (78), Expect = 0.022
 Identities = 19/57 (33%), Positives = 30/57 (52%)

Query: 79  LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCR 135
           L+ NG+  +DE  + S  T + L + +E     IA+A    S  +R  ++AA NP R
Sbjct: 524 LSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIR 580


>gnl|CDD|33404 COG3604, FhlA, Transcriptional regulator containing GAF, AAA-type
           ATPase, and DNA binding domains [Transcription / Signal
           transduction mechanisms].
          Length = 550

 Score = 33.4 bits (76), Expect = 0.037
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 74  PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132
            G   LA  G LFLDEI E        L + L+ GE      +R I    R+  IAA N
Sbjct: 310 RGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRV--IAATN 366


>gnl|CDD|35700 KOG0479, KOG0479, KOG0479, DNA replication licensing factor, MCM3
           component [Replication, recombination and repair].
          Length = 818

 Score = 33.0 bits (75), Expect = 0.055
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 79  LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133
           LA  GV+ +DE  + S     A+ + +E     IA+A    S  +R  ++AA NP
Sbjct: 396 LADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANP 450


>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine
           Kinases, Met and Ron.  Protein Tyrosine Kinase (PTK)
           family; Met and Ron; catalytic (c) domain. The PTKc
           family is part of a larger superfamily that includes the
           catalytic domains of other kinases such as protein
           serine/threonine kinases, RIO kinases, and
           phosphoinositide 3-kinase (PI3K). PTKs catalyze the
           transfer of the gamma-phosphoryl group from ATP to
           tyrosine (tyr) residues in protein substrates. Met and
           Ron are receptor tyr kinases (RTKs) composed of an
           alpha-beta heterodimer. The extracellular alpha chain is
           disulfide linked to the beta chain, which contains an
           extracellular ligand-binding region with a sema domain,
           a PSI domain and four IPT repeats, a transmembrane
           segment, and an intracellular catalytic domain. Binding
           to their ligands leads to receptor dimerization,
           autophosphorylation, activation, and intracellular
           signaling. Met binds to the ligand, hepatocyte growth
           factor/scatter factor (HGF/SF), and is also called the
           HGF receptor. HGF/Met signaling plays a role in growth,
           transformation, cell motility, invasion, metastasis,
           angiogenesis, wound healing, and tissue regeneration.
           Aberrant expression of Met through mutations or gene
           amplification is associated with many human cancers
           including hereditary papillary renal and gastric
           carcinomas. The ligand for Ron is macrophage stimulating
           protein (MSP). Ron signaling is important in regulating
           cell motility, adhesion, proliferation, and apoptosis.
           Aberrant Ron expression is implicated in tumorigenesis
           and metastasis.
          Length = 262

 Score = 32.1 bits (73), Expect = 0.092
 Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 15/71 (21%)

Query: 10  SMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGG 69
           S+L  CLPS   PL       V + Y   G   +   FI     RS  H+ T+  LIG G
Sbjct: 60  SLLGICLPSEGSPL-------VVLPYMKHGDLRN---FI-----RSETHNPTVKDLIGFG 104

Query: 70  LQVLPGEDSLA 80
           LQV  G + LA
Sbjct: 105 LQVAKGMEYLA 115


>gnl|CDD|144183 pfam00493, MCM, MCM2/3/5 family. 
          Length = 327

 Score = 31.4 bits (72), Expect = 0.17
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 79  LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGM 138
           LA  GV  +DE  + + +   A+ + +E     IA+A    +  +R  ++AA NP   G 
Sbjct: 119 LADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGIVATLNARCSVLAAANP-IFGR 177

Query: 139 SNKDENVCIRGPRCATEYQARISGPLMDRIDI 170
            +  ++V              +  PL+ R D+
Sbjct: 178 YDPKKSV---------AENINLPPPLLSRFDL 200


>gnl|CDD|33094 COG3284, AcoR, Transcriptional activator of acetoin/glycerol
           metabolism [Secondary metabolites biosynthesis,
           transport, and catabolism / Transcription].
          Length = 606

 Score = 31.0 bits (70), Expect = 0.19
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 79  LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132
            A  G LFLDEI +      + L + L+ G        R       I++IAA +
Sbjct: 405 QADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRI---KVDIRVIAATH 455


>gnl|CDD|31266 COG1067, LonB, Predicted ATP-dependent protease [Posttranslational
           modification, protein turnover, chaperones].
          Length = 647

 Score = 29.9 bits (67), Expect = 0.44
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 8/72 (11%)

Query: 71  QVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECII--------ARANRKISYP 122
           +V PG    A+ GVL +DEI   +      L + L   E  I            R  S P
Sbjct: 215 RVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVP 274

Query: 123 SRIQLIAAMNPC 134
             ++LI A N  
Sbjct: 275 LDLKLILAGNRE 286


>gnl|CDD|35703 KOG0482, KOG0482, KOG0482, DNA replication licensing factor, MCM7
           component [Replication, recombination and repair].
          Length = 721

 Score = 29.2 bits (65), Expect = 0.65
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 79  LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGM 138
           LA  G+  +DE  +       A+ + +E     IA+A    +  +R  ++AA NP   G 
Sbjct: 437 LADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAY-GR 495

Query: 139 SNKDENVCIRGPRCATEYQARISGPLMDRIDI 170
            N         PR + E    +   L+ R D+
Sbjct: 496 YN---------PRRSPEQNINLPAALLSRFDL 518


>gnl|CDD|35702 KOG0481, KOG0481, KOG0481, DNA replication licensing factor, MCM5
           component [Replication, recombination and repair].
          Length = 729

 Score = 28.8 bits (64), Expect = 0.83
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query: 79  LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133
           LA  GV+ +DE  +       A+ + +E     IA+A    +  SR  ++AA NP
Sbjct: 426 LADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANP 480


>gnl|CDD|143797 pfam00004, AAA, ATPase family associated with various cellular
           activities (AAA).  AAA family proteins often perform
           chaperone-like functions that assist in the assembly,
           operation, or disassembly of protein complexes.
          Length = 131

 Score = 27.6 bits (62), Expect = 2.0
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 27/95 (28%)

Query: 84  VLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRI--QLIAAMNPCRCGMSNK 141
           V+F+DEI   +                  +R +   S   R+  QL+  ++    G ++ 
Sbjct: 60  VIFIDEIDALAG-----------------SRGSGGDSESRRVVNQLLTELD----GFTSS 98

Query: 142 DENVCIRGPRCATEYQARISGPLM-DRIDIRIAVP 175
              V +     AT    ++   L+  R D  I  P
Sbjct: 99  LSKVIVIA---ATNRPDKLDPALLRGRFDRIIEFP 130


>gnl|CDD|176857 cd07815, SRPBCC_PITP, Lipid-binding SRPBCC domain of Class I and
          Class II Phosphatidylinositol Transfer Proteins.  This
          family includes the SRPBCC
          (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of the
          phosphatidylinositol transfer protein (PITP) family of
          lipid transfer proteins. This family of proteins
          includes Class 1 PITPs (PITPNA/PITPalpha and
          PITPNB/PITPbeta, Drosophila vibrator and related
          proteins), Class IIA  PITPs (PITPNM1/PITPalphaI/Nir2,
          PITPNM2/PITPalphaII/Nir3, Drosophila RdgB, and related
          proteins), and Class IIB  PITPs (PITPNC1/RdgBbeta and
          related proteins). The PITP family belongs to the
          SRPBCC domain superfamily of proteins that bind
          hydrophobic ligands. SRPBCC domains have a deep
          hydrophobic ligand-binding pocket. In vitro, PITPs bind
          phosphatidylinositol (PtdIns), as well as
          phosphatidylcholine (PtdCho) but with a lower affinity.
          They transfer these lipids from one membrane
          compartment to another. The cellular roles of PITPs
          include inositol lipid signaling, PtdIns metabolism,
          and membrane trafficking. Class III PITPs, exemplified
          by the Sec14p family, are found in yeast and plants but
          are unrelated in sequence and structure to Class I and
          II PITPs and belong to a different superfamily.
          Length = 251

 Score = 27.3 bits (61), Expect = 2.5
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 7/46 (15%)

Query: 19 ILLPLSLEESLEVSMIYSISGHSSHEYS------FIQNRPFRSPHH 58
          I+LPL++EE  ++  +Y ++  S  E         ++N P+   + 
Sbjct: 7  IVLPLTVEE-YQIGQLYMVAKASKEETGSGEGVEVLKNEPYEDENG 51


>gnl|CDD|36491 KOG1277, KOG1277, KOG1277, Endosomal membrane proteins, EMP70
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 593

 Score = 26.8 bits (59), Expect = 3.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 53  FRSPHHSVTIAALIGGGLQVL 73
           FR P H +  +A++G G Q+ 
Sbjct: 286 FRFPSHPLLFSAVLGSGAQLF 306


>gnl|CDD|33093 COG3283, TyrR, Transcriptional regulator of aromatic amino acids
           metabolism [Transcription / Amino acid transport and
           metabolism].
          Length = 511

 Score = 26.8 bits (59), Expect = 4.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 74  PGEDSLAHNGVLFLDEIPEFSPQ 96
            G    A+ G + LDEI E SP+
Sbjct: 286 KGFFEQANGGTVLLDEIGEMSPR 308


>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family. 
           This group is a member of the medium chain
           dehydrogenases/reductase (MDR)/zinc-dependent alcohol
           dehydrogenase-like family, but lacks the zinc-binding
           sites of the zinc-dependent alcohol dehydrogenases. The
           medium chain dehydrogenases/reductase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family,
           which contains the zinc-dependent alcohol dehydrogenase
           (ADH-Zn) and related proteins, is a diverse group of
           proteins related to the first identified member, class I
           mammalian ADH.  MDRs display a broad range of activities
           and are distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P)-binding Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group contains a
           host of activities, including the founding alcohol
           dehydrogenase (ADH), quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol dehydrogenases (ADHs)
           catalyze the  NAD(P)(H)-dependent interconversion of
           alcohols to aldehydes or ketones.  Active site zinc has
           a catalytic role, while structural zinc aids in
           stability.  ADH-like proteins typically form dimers
           (typically higher plants, mammals) or tetramers (yeast,
           bacteria), and generally have 2 tightly bound zinc atoms
           per subunit. The active site zinc is coordinated by a
           histidine, two cysteines, and a water molecule. The
           second zinc seems to play a structural role, affects
           subunit interactions, and is typically coordinated by 4
           cysteines.
          Length = 305

 Score = 26.6 bits (59), Expect = 4.2
 Identities = 7/42 (16%), Positives = 10/42 (23%), Gaps = 7/42 (16%)

Query: 39  GHSSHEYSFIQNRPFRSPHHSVTIAAL-------IGGGLQVL 73
           G SS E +      F        +          +   L  L
Sbjct: 222 GSSSGEPAVFNPAAFVGGGGGRRLYTFFLYDGEPLAADLARL 263


>gnl|CDD|35698 KOG0477, KOG0477, KOG0477, DNA replication licensing factor, MCM2
           component [Replication, recombination and repair].
          Length = 854

 Score = 26.1 bits (57), Expect = 5.3
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 79  LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133
           LA  GV  +DE  + + Q   ++ + +E     I++A    S  +R  +IAA NP
Sbjct: 544 LADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANP 598


>gnl|CDD|36057 KOG0839, KOG0839, KOG0839, RNA Methylase, SpoU family [RNA
           processing and modification].
          Length = 1477

 Score = 26.1 bits (57), Expect = 6.1
 Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 15/100 (15%)

Query: 15  CLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLP 74
           CL S+          +V M Y ++   S     + N  F        + +        + 
Sbjct: 95  CLRSVWH------KFQVWMSYRLNDLISENLKHLLNDNFGKKIAQPFVESFAAEQNANIK 148

Query: 75  GED------SLAHN--GVLFLDE-IPEFSPQTLNALRQPL 105
            E+      SL H    V   DE     S + L+ +  PL
Sbjct: 149 HENLHLLILSLLHYLEVVYLFDECKNGASSKCLDFIIVPL 188


>gnl|CDD|35957 KOG0738, KOG0738, KOG0738, AAA+-type ATPase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 491

 Score = 25.7 bits (56), Expect = 7.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 1   MIGPPGARKSMLASCLPS 18
           M+GPPG  K++LA  + +
Sbjct: 250 MVGPPGTGKTLLAKAVAT 267


>gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
           (vWA) domain [General function prediction only].
          Length = 4600

 Score = 25.4 bits (55), Expect = 8.8
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 85  LFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQ----LIAAMNP 133
           L LDEI   S +TL  +   L   E  I  +      P RI     L   MNP
Sbjct: 639 LLLDEINLASEETLELIDGLLGKKESGILLSESGDLRPIRIHPGFRLFGCMNP 691


>gnl|CDD|37741 KOG2530, KOG2530, KOG2530, Members of tubulin/FtsZ family
           [Cytoskeleton].
          Length = 483

 Score = 25.4 bits (55), Expect = 9.6
 Identities = 26/124 (20%), Positives = 40/124 (32%), Gaps = 4/124 (3%)

Query: 2   IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVT 61
           +G      + LA    SI LP  L  S  +    ++S   S   +     PF        
Sbjct: 288 LGDLWETSAKLARAFDSITLPTRLISSSNLRQRDTLSYLGSKVITLGYALPFPLVTGQSL 347

Query: 62  IAALIGGGLQVLPGEDSLAHNGVL--FLDEIPEFSPQTLNALRQPLETGECIIARANRKI 119
              L+  G  VLP + S   N      L  I +      +   +P  + + I    +   
Sbjct: 348 EDTLVSSGSAVLPTQLSHKPNNCQSGVLRSIDDRGNLLHDHHYEPASSSKMIELYQHL-- 405

Query: 120 SYPS 123
             PS
Sbjct: 406 YLPS 409


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,249,353
Number of extensions: 110168
Number of successful extensions: 339
Number of sequences better than 10.0: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 43
Length of query: 186
Length of database: 6,263,737
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,362,145
Effective search space: 427490210
Effective search space used: 427490210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)