RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781026|ref|YP_003065439.1| hypothetical protein
CLIBASIA_04640 [Candidatus Liberibacter asiaticus str. psy62]
         (186 letters)



>gnl|CDD|129465 TIGR00368, TIGR00368, Mg chelatase-related protein.  The N-terminal
           end matches very strongly a pfam Mg_chelatase domain.
          Length = 499

 Score =  212 bits (540), Expect = 7e-56
 Identities = 91/175 (52%), Positives = 119/175 (68%), Gaps = 1/175 (0%)

Query: 1   MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV 60
           + GPPG+ K+MLAS L  IL PL+ EE++E + I+S+ G    +   I+ RPFRSPHHS 
Sbjct: 216 LFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLI-DRKQIKQRPFRSPHHSA 274

Query: 61  TIAALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKIS 120
           +  AL+GGG   LPGE SLAHNGVLFLDE+PEF    L+ALR+P+E G   I+RA+ KI 
Sbjct: 275 SKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIF 334

Query: 121 YPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVP 175
           YP+R QL+AAMNPC CG        C   P+  + Y  ++SGP +DRID+ + VP
Sbjct: 335 YPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVP 389


>gnl|CDD|182120 PRK09862, PRK09862, putative ATP-dependent protease; Provisional.
          Length = 506

 Score =  176 bits (447), Expect = 3e-45
 Identities = 85/175 (48%), Positives = 117/175 (66%), Gaps = 3/175 (1%)

Query: 1   MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV 60
           +IGPPG  K+MLAS +  +L  LS EE+LE + I S+    S +  + + RPFRSPHHS 
Sbjct: 215 LIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQW-RQRPFRSPHHSA 273

Query: 61  TIAALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKIS 120
           ++ A++GGG    PGE SLAHNGVLFLDE+PEF  +TL+ALR+P+E+G+  ++R   KI+
Sbjct: 274 SLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKIT 333

Query: 121 YPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVP 175
           YP+R QL+AAMNP   G    + N C   P     Y  R+SGP +DR D+ + +P
Sbjct: 334 YPARFQLVAAMNPSPTGHYQGNHNRCT--PEQTLRYLNRLSGPFLDRFDLSLEIP 386


>gnl|CDD|162667 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D.  This
           model represents one of two ATPase subunits of the
           trimeric magnesium chelatase responsible for insertion
           of magnesium ion into protoporphyrin IX. This is an
           essential step in the biosynthesis of both chlorophyll
           and bacteriochlorophyll. This subunit is found in green
           plants, photosynthetic algae, cyanobacteria and other
           photosynthetic bacteria. Unlike subunit I (TIGR02030),
           this subunit is not found in archaea.
          Length = 589

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 10/93 (10%)

Query: 51  RPFRSPHHSVTIAALIGG---------GLQVL-PGEDSLAHNGVLFLDEIPEFSPQTLNA 100
            PF      VT   LIGG         G +V  PG    A  GVL++D          N 
Sbjct: 44  MPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNR 103

Query: 101 LRQPLETGECIIARANRKISYPSRIQLIAAMNP 133
           L Q L+ G  I+ R    + +P++  LIA  +P
Sbjct: 104 LLQALDEGVVIVEREGISVVHPAKFALIATYDP 136


>gnl|CDD|162859 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.  A number of
           genomes (actinobacteria, cyanobacteria,
           betaproteobacteria and pseudomonads) which apparently
           biosynthesize B12, encode a cobN gene but are
           demonstrably lacking cobS and cobT. These genomes do,
           however contain a homolog (modelled here) of the
           magnesium chelatase subunits BchI/BchD family. Aside
           from the cyanobacteria (which have a separate magnesium
           chelatase trimer), these species do not make chlorins,
           so do not have any use for a magnesium chelatase.
           Furthermore, in nearly all cases the members of this
           family are proximal to either CobN itself or other genes
           involved in cobalt transport or B12 biosynthesis.
          Length = 633

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 59  SVTIAALIGGGLQVL-PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANR 117
           S+ I   +  G +   PG  + AH G+L++DE+       ++ L      G   + R   
Sbjct: 103 SLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGL 162

Query: 118 KISYPSRIQLIAAMNP 133
            +S+P+R  LI  MNP
Sbjct: 163 SVSHPARFVLIGTMNP 178


>gnl|CDD|131948 TIGR02902, spore_lonB, ATP-dependent protease LonB.  Members of
           this protein are LonB, a paralog of the ATP-dependent
           protease La (LonA, TIGR00763). LonB proteins are found
           strictly, and almost universally, in endospore-forming
           bacteria. This protease was shown, in Bacillus subtilis,
           to be expressed specifically in the forespore, during
           sporulation, under control of sigma(F). The lonB gene,
           despite location immediately upstream of lonA, was shown
           to be monocistronic. LonB appears able to act on
           sigma(H) for post-translation control, but lonB mutation
           did not produce an obvious sporulation defect under the
           conditions tested. Note that additional paralogs of LonA
           and LonB occur in the Clostridium lineage and this model
           selects only one per species as the protein that
           corresponds to LonB in B. subtilis.
          Length = 531

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 20/41 (48%), Positives = 24/41 (58%)

Query: 66  IGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLE 106
           I G  Q  PG  + AH GVLF+DEI E  P  +N L + LE
Sbjct: 160 IAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLE 200


>gnl|CDD|183114 PRK11388, PRK11388, DNA-binding transcriptional regulator DhaR;
           Provisional.
          Length = 638

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 79  LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132
           LAH G LFL+++   SP+  +AL Q L+TG  +I R + +   P  +++IA   
Sbjct: 414 LAHGGTLFLEKVEYLSPELQSALLQVLKTG--VITRLDSRRLIPVDVRVIATTT 465


>gnl|CDD|149019 pfam07728, AAA_5, AAA domain (dynein-related subfamily).  This Pfam
           entry includes some of the AAA proteins not detected by
           the pfam00004 model.
          Length = 139

 Score = 35.8 bits (83), Expect = 0.008
 Identities = 29/141 (20%), Positives = 45/141 (31%), Gaps = 29/141 (20%)

Query: 1   MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYS-FIQNRPFRSPHHS 59
           ++GPPG  KS LA  L + L    +           +              R        
Sbjct: 4   LVGPPGTGKSELAERLAAALSNRPVFY---------VQLTRDTTEEDLKGRR-------- 46

Query: 60  VTIAALIGGGLQVLPGE--DSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANR 117
                +  G    + G    +     +  LDEI   +P  LN+L   L+    ++     
Sbjct: 47  ----NIANGTTSWVDGPLVRAAREGEIAVLDEINRANPDVLNSLLSLLDERRLLLPEGGE 102

Query: 118 KISYP-----SRIQLIAAMNP 133
            +         R +LIA MNP
Sbjct: 103 LVKVAPDDFAKRFRLIATMNP 123


>gnl|CDD|184312 PRK13765, PRK13765, ATP-dependent protease Lon; Provisional.
          Length = 637

 Score = 33.4 bits (77), Expect = 0.031
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 4/35 (11%)

Query: 1  MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIY 35
          MIG PG  KSMLA  + + LLP   +E L+  ++Y
Sbjct: 55 MIGSPGTGKSMLAKAM-AELLP---KEELQDILVY 85



 Score = 29.6 bits (67), Expect = 0.54
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 68  GGLQ------VLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGE 109
           GGL+      V  G    AH GVLF+DEI     ++  +L   ++  +
Sbjct: 207 GGLETPAHDRVEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKK 254


>gnl|CDD|162544 TIGR01817, nifA, Nif-specific regulatory protein.  This model
           represents NifA, a DNA-binding regulatory protein for
           nitrogen fixation. The model produces scores between the
           trusted and noise cutoffs for a well-described NifA
           homolog in Aquifex aeolicus (which lacks nitrogenase),
           for transcriptional activators of alternative
           nitrogenases (VFe or FeFe instead of MoFe), and
           truncated forms.
          Length = 534

 Score = 33.5 bits (77), Expect = 0.037
 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 79  LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132
           LA  G LFLDEI E SP     L + L+ GE      NR +    R  L+AA N
Sbjct: 288 LADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVR--LVAATN 339


>gnl|CDD|163066 TIGR02903, spore_lon_C, ATP-dependent protease, Lon family.
           Members of this protein family resemble the widely
           distributed ATP-dependent protease La, also called Lon
           and LonA. It resembles even more closely LonB, which is
           a LonA paralog found in genomes if and only if the
           species is capable of endospore formation (as in
           Bacillus subtilis, Clostridium tetani, and select other
           members of the Firmicutes) and expressed specifically in
           the forespore compartment. Members of this family are
           restricted to a subset of spore-forming species, and are
           very likely to participate in the program of endospore
           formation. We propose the designation LonC.
          Length = 615

 Score = 32.5 bits (74), Expect = 0.059
 Identities = 15/27 (55%), Positives = 17/27 (62%)

Query: 80  AHNGVLFLDEIPEFSPQTLNALRQPLE 106
           AH GVLF+DEI E  P   N L + LE
Sbjct: 264 AHGGVLFIDEIGELDPLLQNKLLKVLE 290


>gnl|CDD|184036 PRK13407, bchI, magnesium chelatase subunit I; Provisional.
          Length = 334

 Score = 32.1 bits (73), Expect = 0.088
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 74  PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133
           PG  + A+ G L++DE+       ++ L    ++GE ++ R    I +P+R  L+ + NP
Sbjct: 121 PGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNP 180


>gnl|CDD|131085 TIGR02030, BchI-ChlI, magnesium chelatase ATPase subunit I.  This
           model represents one of two ATPase subunits of the
           trimeric magnesium chelatase responsible for insertion
           of magnesium ion into protoporphyrin IX. This is an
           essential step in the biosynthesis of both chlorophyll
           and bacteriochlorophyll. This subunit is found in green
           plants, photosynthetic algae, cyanobacteria and other
           photosynthetic bacteria.
          Length = 337

 Score = 31.4 bits (71), Expect = 0.15
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 74  PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133
           PG  + A+ G+L++DE+       ++ L     +G  ++ R    I +P+R  L+ + NP
Sbjct: 124 PGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNP 183


>gnl|CDD|179916 PRK05022, PRK05022, anaerobic nitric oxide reductase transcription
           regulator; Provisional.
          Length = 509

 Score = 30.9 bits (71), Expect = 0.19
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 74  PGEDSLAHNGVLFLDEIPEFS 94
            G+  LA  G LFLDEI E  
Sbjct: 274 SGKFELADGGTLFLDEIGELP 294


>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
           activities.  AAA - ATPases associated with a variety of
           cellular activities. This profile/alignment only detects
           a fraction of this vast family. The poorly conserved
           N-terminal helix is missing from the alignment.
          Length = 148

 Score = 30.8 bits (69), Expect = 0.22
 Identities = 26/134 (19%), Positives = 38/134 (28%), Gaps = 16/134 (11%)

Query: 1   MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIY-SISGHSSHEYSFIQNRPFRSPHHS 59
           ++GPPG+ K+ LA  L   L P          +IY             +          S
Sbjct: 7   IVGPPGSGKTTLARALARELGPPG------GGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60

Query: 60  VTIAALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKI 119
            +    +   L +           VL LDEI         AL   L        R    +
Sbjct: 61  GSGELRLRLALALARKLK----PDVLILDEITSLLDAEQEALLLLL-----EELRLLLLL 111

Query: 120 SYPSRIQLIAAMNP 133
                + +I   N 
Sbjct: 112 KSEKNLTVILTTND 125


>gnl|CDD|163070 TIGR02915, PEP_resp_reg, putative PEP-CTERM system response
           regulator.  Members of this protein family share
           full-length homology with (but do not include) the
           acetoacetate metabolism regulatory protein AtoC. These
           proteins have a Fis family DNA binding sequence
           (pfam02954), a response regulator receiver domain
           (pfam00072), and sigma-54 interaction domain
           (pfam00158).
          Length = 445

 Score = 30.5 bits (69), Expect = 0.28
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 68  GGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNA-LRQPLETGECIIARANRKISYPSRIQ 126
           G ++   G+   AH G LFLDEI +  P  L A L + L+  E +I R   +   P  ++
Sbjct: 220 GAVKQTLGKIEYAHGGTLFLDEIGDL-PLNLQAKLLRFLQ--ERVIERLGGREEIPVDVR 276

Query: 127 LIAAMN 132
           ++ A N
Sbjct: 277 IVCATN 282


>gnl|CDD|183157 PRK11479, PRK11479, hypothetical protein; Provisional.
          Length = 274

 Score = 30.2 bits (68), Expect = 0.29
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 62  IAALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALR 102
           +A   G G+Q++  + ++ H+  LF   +P+ +PQ    + 
Sbjct: 103 VAEATGAGVQIVSLKKAIKHSDKLFALRVPDLTPQQATKIT 143


>gnl|CDD|181743 PRK09270, PRK09270, nucleoside triphosphate hydrolase
          domain-containing protein; Reviewed.
          Length = 229

 Score = 29.9 bits (68), Expect = 0.43
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 1  MIGPPGARKSMLASCLPSILLPLSLEESLEVSM 33
          + GPPGA KS LA  L ++L       +++V M
Sbjct: 38 IAGPPGAGKSTLAEFLEALLQQDGELPAIQVPM 70


>gnl|CDD|183099 PRK11361, PRK11361, acetoacetate metabolism regulatory protein
           AtoC; Provisional.
          Length = 457

 Score = 28.3 bits (63), Expect = 1.2
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 80  AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132
           A+ G L LDEI E        L + L+  E    R     +    I++IAA N
Sbjct: 236 ANEGTLLLDEIGEMPLVLQAKLLRILQERE--FERIGGHQTIKVDIRIIAATN 286


>gnl|CDD|182412 PRK10365, PRK10365, transcriptional regulatory protein ZraR;
           Provisional.
          Length = 441

 Score = 28.1 bits (62), Expect = 1.4
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 80  AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAA 130
           A  G LFLDEI + SP     L + ++  E     +N+ IS   R  LIAA
Sbjct: 232 ADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVR--LIAA 280


>gnl|CDD|181710 PRK09225, PRK09225, threonine synthase; Validated.
          Length = 462

 Score = 27.4 bits (62), Expect = 2.1
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 12/51 (23%)

Query: 54  RSPHHSVTIA-ALIGGGLQVLPGEDSLAHNGVLFL-DEIPEFSPQTLNALR 102
           R     V+ + A++ G          LA +G L++ +E+P+ S + ++AL 
Sbjct: 7   RGNAPQVSFSEAVLQG----------LAPDGGLYVPEELPKLSAEEIDALL 47


>gnl|CDD|185322 PRK15424, PRK15424, propionate catabolism operon regulatory protein
           PrpR; Provisional.
          Length = 538

 Score = 27.0 bits (60), Expect = 2.7
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 80  AHNGVLFLDEIPE 92
           AH G LFLDEI E
Sbjct: 321 AHGGTLFLDEIGE 333


>gnl|CDD|162808 TIGR02329, propionate_PrpR, propionate catabolism operon regulatory
           protein PrpR.  At least five distinct pathways exists
           for the catabolism of propionate by way of
           propionyl-CoA. Members of this family represent the
           transcriptional regulatory protein PrpR, whose gene is
           found in most cases divergently transcribed from an
           operon for the methylcitric acid cycle of propionate
           catabolism. 2-methylcitric acid, a catabolite by this
           pathway, is a coactivator of PrpR.
          Length = 526

 Score = 26.4 bits (58), Expect = 4.1
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 80  AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAA 130
           AH G LFLDEI E        L + LE  E +       +  P  ++++AA
Sbjct: 306 AHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPV--PVDVRVVAA 354


>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
          Provisional.
          Length = 255

 Score = 26.1 bits (58), Expect = 5.1
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 1  MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYS 46
          +IGP G  KS L  C   +L P S    L       IS  SS + +
Sbjct: 33 LIGPNGCGKSTLLKCFARLLTPQSGTVFLGDK---PISMLSSRQLA 75


>gnl|CDD|128644 smart00350, MCM, minichromosome  maintenance proteins. 
          Length = 509

 Score = 26.1 bits (58), Expect = 5.2
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query: 79  LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133
           LA NGV  +DE  +       A+ + +E     IA+A    +  +R  ++AA NP
Sbjct: 298 LADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANP 352


>gnl|CDD|162029 TIGR00764, lon_rel, lon-related putative ATP-dependent protease.
           Members of this family from Pyrococcus horikoshii and
           Pyrococcus abyssi each contain a predicted intein.
          Length = 608

 Score = 26.0 bits (57), Expect = 5.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 70  LQVLPGEDSLAHNGVLFLDEI 90
            +V  G    AH GVL++DEI
Sbjct: 206 ERVEAGAIHRAHKGVLYIDEI 226



 Score = 25.2 bits (55), Expect = 9.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 1  MIGPPGARKSMLASCLPSILLPLSLEESL 29
          +IG PG  KSMLA  +  +L    LE+ L
Sbjct: 42 LIGEPGVGKSMLAKAMAELLPDEELEDIL 70


>gnl|CDD|177314 PHA01747, PHA01747, putative ATP-dependent protease.
          Length = 425

 Score = 25.9 bits (57), Expect = 5.9
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 82  NGVLFLDEIPEFSPQTLNALRQPLETG--ECIIARA----NRKISYPSRIQLIAAMNP 133
           NG++F DEI  +    + A+   L TG   C+  R     +   +    I +I A NP
Sbjct: 244 NGLIF-DEIQTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNP 300


>gnl|CDD|182070 PRK09776, PRK09776, putative diguanylate cyclase; Provisional.
          Length = 1092

 Score = 25.8 bits (57), Expect = 6.5
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 151 RCATEYQARISGPLMDRIDIRIAVPSRT-HIRSFCN 185
           R   E +  + G    +++ RI V     HIR+  N
Sbjct: 467 RVEKEIRDALQGRSPFKLEFRIVVKDGVRHIRALAN 502


>gnl|CDD|173403 PTZ00111, PTZ00111, DNA replication licensing factor MCM4;
           Provisional.
          Length = 915

 Score = 25.7 bits (56), Expect = 6.9
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 74  PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133
           PG   LA+ GV  +DE+ +   ++  +L + +E     IA+A    +  +   ++A+ NP
Sbjct: 550 PGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNP 609


>gnl|CDD|185413 PTZ00047, PTZ00047, cytochrome c oxidase subunit II; Provisional.
          Length = 162

 Score = 25.6 bits (56), Expect = 7.2
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 3/22 (13%)

Query: 163 PLMDR---IDIRIAVPSRTHIR 181
           P M R   +D R+ +P+RTHIR
Sbjct: 63  PGMLRQLEVDKRLTLPTRTHIR 84


>gnl|CDD|184703 PRK14485, PRK14485, putative bifunctional cbb3-type cytochrome c
           oxidase subunit I/II; Provisional.
          Length = 712

 Score = 25.8 bits (57), Expect = 7.8
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 25  LEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLP 74
           L E+  ++ +Y         + +++ +P +    + TIA LIGG ++++P
Sbjct: 468 LAEAAPLTKVYHPRASGEKWHRWLERKPIQLTVLT-TIAILIGGMVEIIP 516


>gnl|CDD|177984 PLN02350, PLN02350, phosphogluconate dehydrogenase
           (decarboxylating).
          Length = 493

 Score = 25.4 bits (56), Expect = 8.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 96  QTLNALRQPLETGECIIARAN 116
           QT+ AL + +E G+CII   N
Sbjct: 88  QTIKALSEYMEPGDCIIDGGN 108


>gnl|CDD|184978 PRK15017, PRK15017, cytochrome o ubiquinol oxidase subunit I;
          Provisional.
          Length = 663

 Score = 25.7 bits (56), Expect = 8.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 52 PFRSPHHSVTIAALIGGGLQVL 73
          PF  P   VTIAA+I GGL ++
Sbjct: 11 PFHEPIVMVTIAAIILGGLALV 32


>gnl|CDD|182758 PRK10820, PRK10820, DNA-binding transcriptional regulator TyrR;
           Provisional.
          Length = 520

 Score = 25.4 bits (56), Expect = 8.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 80  AHNGVLFLDEIPEFSPQ 96
           A+ G + LDEI E SP+
Sbjct: 297 ANGGSVLLDEIGEMSPR 313


>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate
           lyase/N-acetylglutamate synthase; Provisional.
          Length = 614

 Score = 25.5 bits (56), Expect = 8.9
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 12/65 (18%)

Query: 52  PFRSPHHSVTIA--ALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGE 109
           PFR  HH V +A    I  G      E+       L L+++ EFS    + + Q L    
Sbjct: 380 PFREAHHIVGVAVVGAIAKG---CALEE-------LSLEQLKEFSDVIEDDVYQILTIES 429

Query: 110 CIIAR 114
           C+  R
Sbjct: 430 CLEKR 434


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0815    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,026,247
Number of extensions: 181138
Number of successful extensions: 432
Number of sequences better than 10.0: 1
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 43
Length of query: 186
Length of database: 5,994,473
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,092,969
Effective search space: 401110962
Effective search space used: 401110962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.4 bits)