RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781026|ref|YP_003065439.1| hypothetical protein CLIBASIA_04640 [Candidatus Liberibacter asiaticus str. psy62] (186 letters) >gnl|CDD|129465 TIGR00368, TIGR00368, Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain. Length = 499 Score = 212 bits (540), Expect = 7e-56 Identities = 91/175 (52%), Positives = 119/175 (68%), Gaps = 1/175 (0%) Query: 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV 60 + GPPG+ K+MLAS L IL PL+ EE++E + I+S+ G + I+ RPFRSPHHS Sbjct: 216 LFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLI-DRKQIKQRPFRSPHHSA 274 Query: 61 TIAALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKIS 120 + AL+GGG LPGE SLAHNGVLFLDE+PEF L+ALR+P+E G I+RA+ KI Sbjct: 275 SKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIF 334 Query: 121 YPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVP 175 YP+R QL+AAMNPC CG C P+ + Y ++SGP +DRID+ + VP Sbjct: 335 YPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVP 389 >gnl|CDD|182120 PRK09862, PRK09862, putative ATP-dependent protease; Provisional. Length = 506 Score = 176 bits (447), Expect = 3e-45 Identities = 85/175 (48%), Positives = 117/175 (66%), Gaps = 3/175 (1%) Query: 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV 60 +IGPPG K+MLAS + +L LS EE+LE + I S+ S + + + RPFRSPHHS Sbjct: 215 LIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQW-RQRPFRSPHHSA 273 Query: 61 TIAALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKIS 120 ++ A++GGG PGE SLAHNGVLFLDE+PEF +TL+ALR+P+E+G+ ++R KI+ Sbjct: 274 SLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKIT 333 Query: 121 YPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVP 175 YP+R QL+AAMNP G + N C P Y R+SGP +DR D+ + +P Sbjct: 334 YPARFQLVAAMNPSPTGHYQGNHNRCT--PEQTLRYLNRLSGPFLDRFDLSLEIP 386 >gnl|CDD|162667 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea. Length = 589 Score = 46.7 bits (111), Expect = 4e-06 Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 10/93 (10%) Query: 51 RPFRSPHHSVTIAALIGG---------GLQVL-PGEDSLAHNGVLFLDEIPEFSPQTLNA 100 PF VT LIGG G +V PG A GVL++D N Sbjct: 44 MPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNR 103 Query: 101 LRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 L Q L+ G I+ R + +P++ LIA +P Sbjct: 104 LLQALDEGVVIVEREGISVVHPAKFALIATYDP 136 >gnl|CDD|162859 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. Length = 633 Score = 44.7 bits (106), Expect = 2e-05 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Query: 59 SVTIAALIGGGLQVL-PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANR 117 S+ I + G + PG + AH G+L++DE+ ++ L G + R Sbjct: 103 SLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGL 162 Query: 118 KISYPSRIQLIAAMNP 133 +S+P+R LI MNP Sbjct: 163 SVSHPARFVLIGTMNP 178 >gnl|CDD|131948 TIGR02902, spore_lonB, ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. Length = 531 Score = 37.1 bits (86), Expect = 0.002 Identities = 20/41 (48%), Positives = 24/41 (58%) Query: 66 IGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLE 106 I G Q PG + AH GVLF+DEI E P +N L + LE Sbjct: 160 IAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLE 200 >gnl|CDD|183114 PRK11388, PRK11388, DNA-binding transcriptional regulator DhaR; Provisional. Length = 638 Score = 37.4 bits (87), Expect = 0.003 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%) Query: 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132 LAH G LFL+++ SP+ +AL Q L+TG +I R + + P +++IA Sbjct: 414 LAHGGTLFLEKVEYLSPELQSALLQVLKTG--VITRLDSRRLIPVDVRVIATTT 465 >gnl|CDD|149019 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 139 Score = 35.8 bits (83), Expect = 0.008 Identities = 29/141 (20%), Positives = 45/141 (31%), Gaps = 29/141 (20%) Query: 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYS-FIQNRPFRSPHHS 59 ++GPPG KS LA L + L + + R Sbjct: 4 LVGPPGTGKSELAERLAAALSNRPVFY---------VQLTRDTTEEDLKGRR-------- 46 Query: 60 VTIAALIGGGLQVLPGE--DSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANR 117 + G + G + + LDEI +P LN+L L+ ++ Sbjct: 47 ----NIANGTTSWVDGPLVRAAREGEIAVLDEINRANPDVLNSLLSLLDERRLLLPEGGE 102 Query: 118 KISYP-----SRIQLIAAMNP 133 + R +LIA MNP Sbjct: 103 LVKVAPDDFAKRFRLIATMNP 123 >gnl|CDD|184312 PRK13765, PRK13765, ATP-dependent protease Lon; Provisional. Length = 637 Score = 33.4 bits (77), Expect = 0.031 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 4/35 (11%) Query: 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIY 35 MIG PG KSMLA + + LLP +E L+ ++Y Sbjct: 55 MIGSPGTGKSMLAKAM-AELLP---KEELQDILVY 85 Score = 29.6 bits (67), Expect = 0.54 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 6/48 (12%) Query: 68 GGLQ------VLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGE 109 GGL+ V G AH GVLF+DEI ++ +L ++ + Sbjct: 207 GGLETPAHDRVEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKK 254 >gnl|CDD|162544 TIGR01817, nifA, Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. Length = 534 Score = 33.5 bits (77), Expect = 0.037 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Query: 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132 LA G LFLDEI E SP L + L+ GE NR + R L+AA N Sbjct: 288 LADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVR--LVAATN 339 >gnl|CDD|163066 TIGR02903, spore_lon_C, ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. Length = 615 Score = 32.5 bits (74), Expect = 0.059 Identities = 15/27 (55%), Positives = 17/27 (62%) Query: 80 AHNGVLFLDEIPEFSPQTLNALRQPLE 106 AH GVLF+DEI E P N L + LE Sbjct: 264 AHGGVLFIDEIGELDPLLQNKLLKVLE 290 >gnl|CDD|184036 PRK13407, bchI, magnesium chelatase subunit I; Provisional. Length = 334 Score = 32.1 bits (73), Expect = 0.088 Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 PG + A+ G L++DE+ ++ L ++GE ++ R I +P+R L+ + NP Sbjct: 121 PGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNP 180 >gnl|CDD|131085 TIGR02030, BchI-ChlI, magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Length = 337 Score = 31.4 bits (71), Expect = 0.15 Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 PG + A+ G+L++DE+ ++ L +G ++ R I +P+R L+ + NP Sbjct: 124 PGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNP 183 >gnl|CDD|179916 PRK05022, PRK05022, anaerobic nitric oxide reductase transcription regulator; Provisional. Length = 509 Score = 30.9 bits (71), Expect = 0.19 Identities = 11/21 (52%), Positives = 12/21 (57%) Query: 74 PGEDSLAHNGVLFLDEIPEFS 94 G+ LA G LFLDEI E Sbjct: 274 SGKFELADGGTLFLDEIGELP 294 >gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 Score = 30.8 bits (69), Expect = 0.22 Identities = 26/134 (19%), Positives = 38/134 (28%), Gaps = 16/134 (11%) Query: 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIY-SISGHSSHEYSFIQNRPFRSPHHS 59 ++GPPG+ K+ LA L L P +IY + S Sbjct: 7 IVGPPGSGKTTLARALARELGPPG------GGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60 Query: 60 VTIAALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKI 119 + + L + VL LDEI AL L R + Sbjct: 61 GSGELRLRLALALARKLK----PDVLILDEITSLLDAEQEALLLLL-----EELRLLLLL 111 Query: 120 SYPSRIQLIAAMNP 133 + +I N Sbjct: 112 KSEKNLTVILTTND 125 >gnl|CDD|163070 TIGR02915, PEP_resp_reg, putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). Length = 445 Score = 30.5 bits (69), Expect = 0.28 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%) Query: 68 GGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNA-LRQPLETGECIIARANRKISYPSRIQ 126 G ++ G+ AH G LFLDEI + P L A L + L+ E +I R + P ++ Sbjct: 220 GAVKQTLGKIEYAHGGTLFLDEIGDL-PLNLQAKLLRFLQ--ERVIERLGGREEIPVDVR 276 Query: 127 LIAAMN 132 ++ A N Sbjct: 277 IVCATN 282 >gnl|CDD|183157 PRK11479, PRK11479, hypothetical protein; Provisional. Length = 274 Score = 30.2 bits (68), Expect = 0.29 Identities = 10/41 (24%), Positives = 22/41 (53%) Query: 62 IAALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALR 102 +A G G+Q++ + ++ H+ LF +P+ +PQ + Sbjct: 103 VAEATGAGVQIVSLKKAIKHSDKLFALRVPDLTPQQATKIT 143 >gnl|CDD|181743 PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed. Length = 229 Score = 29.9 bits (68), Expect = 0.43 Identities = 13/33 (39%), Positives = 19/33 (57%) Query: 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSM 33 + GPPGA KS LA L ++L +++V M Sbjct: 38 IAGPPGAGKSTLAEFLEALLQQDGELPAIQVPM 70 >gnl|CDD|183099 PRK11361, PRK11361, acetoacetate metabolism regulatory protein AtoC; Provisional. Length = 457 Score = 28.3 bits (63), Expect = 1.2 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 80 AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132 A+ G L LDEI E L + L+ E R + I++IAA N Sbjct: 236 ANEGTLLLDEIGEMPLVLQAKLLRILQERE--FERIGGHQTIKVDIRIIAATN 286 >gnl|CDD|182412 PRK10365, PRK10365, transcriptional regulatory protein ZraR; Provisional. Length = 441 Score = 28.1 bits (62), Expect = 1.4 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Query: 80 AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAA 130 A G LFLDEI + SP L + ++ E +N+ IS R LIAA Sbjct: 232 ADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVR--LIAA 280 >gnl|CDD|181710 PRK09225, PRK09225, threonine synthase; Validated. Length = 462 Score = 27.4 bits (62), Expect = 2.1 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 12/51 (23%) Query: 54 RSPHHSVTIA-ALIGGGLQVLPGEDSLAHNGVLFL-DEIPEFSPQTLNALR 102 R V+ + A++ G LA +G L++ +E+P+ S + ++AL Sbjct: 7 RGNAPQVSFSEAVLQG----------LAPDGGLYVPEELPKLSAEEIDALL 47 >gnl|CDD|185322 PRK15424, PRK15424, propionate catabolism operon regulatory protein PrpR; Provisional. Length = 538 Score = 27.0 bits (60), Expect = 2.7 Identities = 10/13 (76%), Positives = 10/13 (76%) Query: 80 AHNGVLFLDEIPE 92 AH G LFLDEI E Sbjct: 321 AHGGTLFLDEIGE 333 >gnl|CDD|162808 TIGR02329, propionate_PrpR, propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. Length = 526 Score = 26.4 bits (58), Expect = 4.1 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 80 AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAA 130 AH G LFLDEI E L + LE E + + P ++++AA Sbjct: 306 AHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPV--PVDVRVVAA 354 >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional. Length = 255 Score = 26.1 bits (58), Expect = 5.1 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 3/46 (6%) Query: 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYS 46 +IGP G KS L C +L P S L IS SS + + Sbjct: 33 LIGPNGCGKSTLLKCFARLLTPQSGTVFLGDK---PISMLSSRQLA 75 >gnl|CDD|128644 smart00350, MCM, minichromosome maintenance proteins. Length = 509 Score = 26.1 bits (58), Expect = 5.2 Identities = 17/55 (30%), Positives = 27/55 (49%) Query: 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 LA NGV +DE + A+ + +E IA+A + +R ++AA NP Sbjct: 298 LADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANP 352 >gnl|CDD|162029 TIGR00764, lon_rel, lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein. Length = 608 Score = 26.0 bits (57), Expect = 5.6 Identities = 10/21 (47%), Positives = 13/21 (61%) Query: 70 LQVLPGEDSLAHNGVLFLDEI 90 +V G AH GVL++DEI Sbjct: 206 ERVEAGAIHRAHKGVLYIDEI 226 Score = 25.2 bits (55), Expect = 9.4 Identities = 13/29 (44%), Positives = 17/29 (58%) Query: 1 MIGPPGARKSMLASCLPSILLPLSLEESL 29 +IG PG KSMLA + +L LE+ L Sbjct: 42 LIGEPGVGKSMLAKAMAELLPDEELEDIL 70 >gnl|CDD|177314 PHA01747, PHA01747, putative ATP-dependent protease. Length = 425 Score = 25.9 bits (57), Expect = 5.9 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%) Query: 82 NGVLFLDEIPEFSPQTLNALRQPLETG--ECIIARA----NRKISYPSRIQLIAAMNP 133 NG++F DEI + + A+ L TG C+ R + + I +I A NP Sbjct: 244 NGLIF-DEIQTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNP 300 >gnl|CDD|182070 PRK09776, PRK09776, putative diguanylate cyclase; Provisional. Length = 1092 Score = 25.8 bits (57), Expect = 6.5 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%) Query: 151 RCATEYQARISGPLMDRIDIRIAVPSRT-HIRSFCN 185 R E + + G +++ RI V HIR+ N Sbjct: 467 RVEKEIRDALQGRSPFKLEFRIVVKDGVRHIRALAN 502 >gnl|CDD|173403 PTZ00111, PTZ00111, DNA replication licensing factor MCM4; Provisional. Length = 915 Score = 25.7 bits (56), Expect = 6.9 Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 PG LA+ GV +DE+ + ++ +L + +E IA+A + + ++A+ NP Sbjct: 550 PGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNP 609 >gnl|CDD|185413 PTZ00047, PTZ00047, cytochrome c oxidase subunit II; Provisional. Length = 162 Score = 25.6 bits (56), Expect = 7.2 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 3/22 (13%) Query: 163 PLMDR---IDIRIAVPSRTHIR 181 P M R +D R+ +P+RTHIR Sbjct: 63 PGMLRQLEVDKRLTLPTRTHIR 84 >gnl|CDD|184703 PRK14485, PRK14485, putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; Provisional. Length = 712 Score = 25.8 bits (57), Expect = 7.8 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 25 LEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLP 74 L E+ ++ +Y + +++ +P + + TIA LIGG ++++P Sbjct: 468 LAEAAPLTKVYHPRASGEKWHRWLERKPIQLTVLT-TIAILIGGMVEIIP 516 >gnl|CDD|177984 PLN02350, PLN02350, phosphogluconate dehydrogenase (decarboxylating). Length = 493 Score = 25.4 bits (56), Expect = 8.0 Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 96 QTLNALRQPLETGECIIARAN 116 QT+ AL + +E G+CII N Sbjct: 88 QTIKALSEYMEPGDCIIDGGN 108 >gnl|CDD|184978 PRK15017, PRK15017, cytochrome o ubiquinol oxidase subunit I; Provisional. Length = 663 Score = 25.7 bits (56), Expect = 8.3 Identities = 12/22 (54%), Positives = 15/22 (68%) Query: 52 PFRSPHHSVTIAALIGGGLQVL 73 PF P VTIAA+I GGL ++ Sbjct: 11 PFHEPIVMVTIAAIILGGLALV 32 >gnl|CDD|182758 PRK10820, PRK10820, DNA-binding transcriptional regulator TyrR; Provisional. Length = 520 Score = 25.4 bits (56), Expect = 8.9 Identities = 9/17 (52%), Positives = 12/17 (70%) Query: 80 AHNGVLFLDEIPEFSPQ 96 A+ G + LDEI E SP+ Sbjct: 297 ANGGSVLLDEIGEMSPR 313 >gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional. Length = 614 Score = 25.5 bits (56), Expect = 8.9 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 12/65 (18%) Query: 52 PFRSPHHSVTIA--ALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGE 109 PFR HH V +A I G E+ L L+++ EFS + + Q L Sbjct: 380 PFREAHHIVGVAVVGAIAKG---CALEE-------LSLEQLKEFSDVIEDDVYQILTIES 429 Query: 110 CIIAR 114 C+ R Sbjct: 430 CLEKR 434 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.137 0.410 Gapped Lambda K H 0.267 0.0815 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,026,247 Number of extensions: 181138 Number of successful extensions: 432 Number of sequences better than 10.0: 1 Number of HSP's gapped: 427 Number of HSP's successfully gapped: 43 Length of query: 186 Length of database: 5,994,473 Length adjustment: 88 Effective length of query: 98 Effective length of database: 4,092,969 Effective search space: 401110962 Effective search space used: 401110962 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (24.4 bits)