BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781026|ref|YP_003065439.1| hypothetical protein
CLIBASIA_04640 [Candidatus Liberibacter asiaticus str. psy62]
         (186 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781026|ref|YP_003065439.1| hypothetical protein CLIBASIA_04640 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 186

 Score =  378 bits (971), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV 60
           MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV
Sbjct: 1   MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV 60

Query: 61  TIAALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKIS 120
           TIAALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKIS
Sbjct: 61  TIAALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKIS 120

Query: 121 YPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVPSRTHI 180
           YPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVPSRTHI
Sbjct: 121 YPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVPSRTHI 180

Query: 181 RSFCNE 186
           RSFCNE
Sbjct: 181 RSFCNE 186


>gi|254781125|ref|YP_003065538.1| hypothetical protein CLIBASIA_05135 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 59

 Score = 26.6 bits (57), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 81 HNGVLFLDEIPEFSPQTLN 99
          H  V+F DE+P F  +TLN
Sbjct: 25 HYNVIFRDEVPSFIYETLN 43


>gi|254780882|ref|YP_003065295.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 328

 Score = 26.6 bits (57), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 6/52 (11%)

Query: 21  LPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQV 72
           LP +L E   ++++ ++  H+SHE  +I  R      +S  +  L G GL++
Sbjct: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRI 170


>gi|254780483|ref|YP_003064896.1| putative inner membrane protein translocase component YidC
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 581

 Score = 24.6 bits (52), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 18  SILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLP 74
           S+ +P S E S      Y   GH+ ++  F  N     P  S+T    +  G +  P
Sbjct: 261 SVFIP-SKETSFHSQFKYLSDGHARYQAKFSANEITILPGKSITTTNFLFAGAKEFP 316


>gi|254780549|ref|YP_003064962.1| signal peptide protein [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 271

 Score = 23.9 bits (50), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 11/71 (15%)

Query: 19 ILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDS 78
          +L+P+S  E L V  IY+   HSS +Y  I+            +    G   + L  + S
Sbjct: 29 LLVPISRREMLSVDNIYNEDYHSS-KYKKIEE----------PVVQFKGSSQENLVRDFS 77

Query: 79 LAHNGVLFLDE 89
          +  NG  F D+
Sbjct: 78 VQENGDRFSDQ 88


>gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 675

 Score = 23.1 bits (48), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 90  IPEFSPQTLNALRQPLETGECIIARANRKI 119
           + E   +   A  Q +E G+ IIAR  R +
Sbjct: 517 VSELWNELHQAFEQTIENGKAIIARKRRDV 546


>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
          Length = 647

 Score = 22.7 bits (47), Expect = 4.3,   Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 1   MIGPPGARKSMLA 13
           ++GPPG  K++LA
Sbjct: 186 LVGPPGTGKTLLA 198


>gi|254780390|ref|YP_003064803.1| nucleoside diphosphate kinase [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 140

 Score = 22.3 bits (46), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 45 YSFIQNRPFRSPHHSVTIAALIGG--GLQVLPGEDSLAHNGVLFLDEIPE 92
          Y   ++RPF        + A+I G   LQVL GE++++ N  +  D  P+
Sbjct: 51 YLIHKDRPFFPE----LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPK 96


>gi|254780973|ref|YP_003065386.1| phosphoribosylaminoimidazole-succinocarboxamide synthase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 255

 Score = 22.3 bits (46), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 141 KDENVCIRGPRCAT 154
           KD+N+    PRCAT
Sbjct: 29  KDDNLLENNPRCAT 42


>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component
          of ABC transporter protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 240

 Score = 22.3 bits (46), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 1  MIGPPGARKSMLASCLPSILLP 22
          +IGP G+ KS +A  +  I+ P
Sbjct: 41 LIGPNGSGKSTIAKLITGIIKP 62


>gi|254780462|ref|YP_003064875.1| enoyl-(acyl carrier protein) reductase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 267

 Score = 22.3 bits (46), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 56  PHHSVTIAALIGGGLQVLPGEDSLA 80
           PH    I    GG ++V+P  +++A
Sbjct: 136 PHGGAMITLTYGGSMRVVPNYNAMA 160


>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 976

 Score = 21.9 bits (45), Expect = 7.9,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 10  SMLASCLPSILLPLSLEESLEVS 32
           SM  +CLP I L + L+ +++VS
Sbjct: 947 SMEKACLPKINLRVPLKVNIKVS 969


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.137    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,758
Number of Sequences: 1233
Number of extensions: 4107
Number of successful extensions: 25
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 14
length of query: 186
length of database: 328,796
effective HSP length: 69
effective length of query: 117
effective length of database: 243,719
effective search space: 28515123
effective search space used: 28515123
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 36 (18.5 bits)