HHsearch alignment for GI: 254781027 and conserved domain: COG1066

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones].

Probab=98.19  E-value=1.8e-06  Score=53.29  Aligned_cols=58  Identities=21%  Similarity=0.359  Sum_probs=48.4

Q ss_pred             CCEEEEEEECCCCCHHHH-------HHHHHCC-CEEEEEHHHHHHHHHHCCCCEEEECCCHHHHHHHHCC
Q ss_conf             566899850357753799-------9872039-8699836550455631288107510749999999709
Q gi|254781027|r   13 SHYLAVGEINLDGSLPAA-------ICAKNMN-KDFICPQSCGSEAAWASDSLRIVAPSTLLELINHLNN   74 (108)
Q Consensus        13 ~~~~~iGELsLdG~Lp~a-------l~a~~~~-~~~iiP~~N~~Ea~lv~~~~~v~~~~~L~evv~~l~g   74 (108)
T Consensus       390 ~~~v~~GEvgL~GeIR~V~~~~~RlkEA~klGFk~aivP~~~~~----~~~~~~~~~v~~l~~a~~~~~~  455 (456)
T COG1066         390 QDTVVFGEVGLSGEIRPVPRGERRLKEAAKLGFKRAIVPKGNIP----LPEGIKVIGVSTLAEALEVVFD  455 (456)
T ss_pred             CCEEEEEECCCCCEEEECCCHHHHHHHHHHCCCCEEECCCCCCC----CCCCCEEEEEECHHHHHHHHHC
T ss_conf             87189995035742542675889999999758977974687677----8888159985009999998744