Query gi|254781027|ref|YP_003065440.1| hypothetical protein CLIBASIA_04645 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 108
No_of_seqs 107 out of 854
Neff 6.7
Searched_HMMs 13730
Date Wed Jun 1 11:05:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781027.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xhka_ d.14.1.10 (A:) ATP-dep 99.2 7E-12 5.1E-16 78.4 6.7 68 4-74 108-183 (185)
2 d1rrea_ d.14.1.10 (A:) ATP-dep 99.0 3.6E-10 2.7E-14 69.7 6.6 63 13-75 106-180 (182)
3 d1em8b_ c.126.1.1 (B:) DNA pol 18.7 8.8 0.00064 17.1 -0.6 19 90-108 77-95 (110)
4 d1xwya1 c.1.9.12 (A:1-260) Deo 15.0 30 0.0022 14.5 1.4 14 13-26 84-97 (260)
5 d1j6oa_ c.1.9.12 (A:) Hypothet 15.0 30 0.0022 14.5 1.4 14 13-26 88-101 (260)
6 d1yixa1 c.1.9.12 (A:1-265) Put 12.5 38 0.0028 13.9 1.4 15 12-26 86-100 (265)
7 d2ah5a1 c.108.1.6 (A:1-210) pr 10.1 56 0.0041 13.1 2.2 45 28-73 165-210 (210)
8 d1zvpa1 d.58.18.9 (A:2-67) Hyp 7.0 72 0.0052 12.5 1.0 37 13-52 20-63 (66)
9 d2ex3b1 a.263.1.1 (B:71-259) D 7.0 77 0.0056 12.3 1.9 22 85-106 70-91 (189)
10 d1zzma1 c.1.9.12 (A:1-259) Put 6.5 82 0.006 12.2 1.4 15 12-26 89-103 (259)
No 1
>d1xhka_ d.14.1.10 (A:) ATP-dependent protease Lon (La), catalytic domain {Methanococcus jannaschii [TaxId: 2190]}
Probab=99.24 E-value=7e-12 Score=78.38 Aligned_cols=68 Identities=19% Similarity=0.305 Sum_probs=57.7
Q ss_pred CCCCCHHHHCCEEEEEEECCCCCH-------HHHHHHHHCC-CEEEEEHHHHHHHHHHCCCCEEEECCCHHHHHHHHCC
Q ss_conf 458885773566899850357753-------7999872039-8699836550455631288107510749999999709
Q gi|254781027|r 4 IQAISTESFSHYLAVGEINLDGSL-------PAAICAKNMN-KDFICPQSCGSEAAWASDSLRIVAPSTLLELINHLNN 74 (108)
Q Consensus 4 sgqi~~~~l~~~~~iGELsLdG~L-------p~al~a~~~~-~~~iiP~~N~~Ea~lv~~~~~v~~~~~L~evv~~l~g 74 (108)
...+|. -+++.|+|||+|||++ +.+.+|++.| +++|+|.+|..|+..+ ++++|++++||.|+++++.+
T Consensus 108 ~~~~~i--~~~~~~~GEl~L~G~VrpV~gi~~ki~~A~~~G~~~viiP~~n~~e~~~~-~~i~i~~v~~l~eai~~l~~ 183 (185)
T d1xhka_ 108 LLDIPL--KQDFAITGSLDLSGNVLAIGGVNEKIEAAKRYGFKRVIIPEANMIDVIET-EGIEIIPVKTLDEIVPLVFD 183 (185)
T ss_dssp HHTCCB--CSSEEECCEECTTCBEECCSCHHHHHHHHHHTTCSEEEEEGGGGGGCCCC-CSSEEEEESBHHHHHHHHBC
T ss_pred HHCCCC--CCEEEEEECCCCCHHHHHCCCHHHHHHHHHHCCCCEEEECHHHHHHCCCC-CCCEEEEECCHHHHHHHHHC
T ss_conf 708986--32078871245533455215789999999983998999877776540656-99699991839999999866
No 2
>d1rrea_ d.14.1.10 (A:) ATP-dependent protease Lon (La), catalytic domain {Escherichia coli [TaxId: 562]}
Probab=99.00 E-value=3.6e-10 Score=69.70 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=53.3
Q ss_pred CCEEEEEEECCCCCH-------HHHHHHHHCC-CEEEEEHHHHHHHHHHC----CCCEEEECCCHHHHHHHHCCC
Q ss_conf 566899850357753-------7999872039-86998365504556312----881075107499999997098
Q gi|254781027|r 13 SHYLAVGEINLDGSL-------PAAICAKNMN-KDFICPQSCGSEAAWAS----DSLRIVAPSTLLELINHLNNK 75 (108)
Q Consensus 13 ~~~~~iGELsLdG~L-------p~al~a~~~~-~~~iiP~~N~~Ea~lv~----~~~~v~~~~~L~evv~~l~g~ 75 (108)
.++.|.|||+|||++ +.+.+|++.| +++|+|.+|..|...++ .+++|++++|+.|++++...+
T Consensus 106 ~~~a~tGei~l~G~V~~Vggi~~ki~~A~~~G~k~viiP~~n~~~~~~~~~~~~~~i~i~~v~~i~e~~~~~l~~ 180 (182)
T d1rrea_ 106 ADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQN 180 (182)
T ss_dssp TTEEECCEECTTCBEECCSCHHHHHHHHHHTTCCEEEEEGGGGGGGGGSCHHHHHHSEEEEESBHHHHHHHHBSS
T ss_pred CCCEEEECCCCCHHHCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC
T ss_conf 002343102540331247886899999998499589855888778886069885893999969299999998556
No 3
>d1em8b_ c.126.1.1 (B:) DNA polymerase III psi subunit {Escherichia coli [TaxId: 562]}
Probab=18.75 E-value=8.8 Score=17.13 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=16.7
Q ss_pred CCCCCHHHHCCHHHHHCCC
Q ss_conf 5699876715846630029
Q gi|254781027|r 90 DNLPNFAEIKGQKTIKRAL 108 (108)
Q Consensus 90 ~~~~Df~dV~GQ~~aKRAL 108 (108)
-..+.+++.++...|||||
T Consensus 77 l~SP~L~~L~~n~~aKRaL 95 (110)
T d1em8b_ 77 VASPALTDLRANPTARAAL 95 (110)
T ss_dssp EEECCHHHHHHCHHHHHHH
T ss_pred EECCCHHHHHCCHHHHHHH
T ss_conf 8083599885397999999
No 4
>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]}
Probab=15.01 E-value=30 Score=14.46 Aligned_cols=14 Identities=36% Similarity=0.498 Sum_probs=11.7
Q ss_pred CCEEEEEEECCCCC
Q ss_conf 56689985035775
Q gi|254781027|r 13 SHYLAVGEINLDGS 26 (108)
Q Consensus 13 ~~~~~iGELsLdG~ 26 (108)
.+...+||-|||..
T Consensus 84 ~~~vaIGEiGLD~~ 97 (260)
T d1xwya1 84 PEVVAIGECGLDFN 97 (260)
T ss_dssp TTEEEEEEEEEETT
T ss_pred CHHHHHHHHCCCCC
T ss_conf 21446654302433
No 5
>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]}
Probab=14.97 E-value=30 Score=14.45 Aligned_cols=14 Identities=36% Similarity=0.423 Sum_probs=11.3
Q ss_pred CCEEEEEEECCCCC
Q ss_conf 56689985035775
Q gi|254781027|r 13 SHYLAVGEINLDGS 26 (108)
Q Consensus 13 ~~~~~iGELsLdG~ 26 (108)
.+.+.+||.|||-.
T Consensus 88 ~~vvaIGEiGLD~~ 101 (260)
T d1j6oa_ 88 EKVVAIGETGLDFF 101 (260)
T ss_dssp TTEEEEEEEEEETT
T ss_pred CCEEEEEECCCCCC
T ss_conf 77036752244544
No 6
>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]}
Probab=12.52 E-value=38 Score=13.88 Aligned_cols=15 Identities=33% Similarity=0.282 Sum_probs=11.8
Q ss_pred HCCEEEEEEECCCCC
Q ss_conf 356689985035775
Q gi|254781027|r 12 FSHYLAVGEINLDGS 26 (108)
Q Consensus 12 l~~~~~iGELsLdG~ 26 (108)
-.+++.+||.|||-.
T Consensus 86 ~~~vvaIGEiGLD~~ 100 (265)
T d1yixa1 86 EEGVVALGETGLDYY 100 (265)
T ss_dssp STTEEEEEEEEEECT
T ss_pred CCCCEEEECCCCCCC
T ss_conf 677416503353334
No 7
>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=10.14 E-value=56 Score=13.07 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=20.3
Q ss_pred HHHHHHHHCC-CEEEEEHHHHHHHHHHCCCCEEEECCCHHHHHHHHC
Q ss_conf 7999872039-869983655045563128810751074999999970
Q gi|254781027|r 28 PAAICAKNMN-KDFICPQSCGSEAAWASDSLRIVAPSTLLELINHLN 73 (108)
Q Consensus 28 p~al~a~~~~-~~~iiP~~N~~Ea~lv~~~~~v~~~~~L~evv~~l~ 73 (108)
.=+.+|+..| +.+.|..+-.....+..-+...+ ++||.|++.+|+
T Consensus 165 ~Di~aa~~aGi~~i~v~~g~~~~~~l~~~~pd~v-i~~l~el~~~le 210 (210)
T d2ah5a1 165 FDMLGARETGIQKLAITWGFGEQADLLNYQPDYI-AHKPLEVLAYFQ 210 (210)
T ss_dssp HHHHHHHHHTCEEEEESSSSSCHHHHHTTCCSEE-ESSTTHHHHHTC
T ss_pred HHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEE-ECCHHHHHHHHC
T ss_conf 8999999859939998579899778976899999-899999999859
No 8
>d1zvpa1 d.58.18.9 (A:2-67) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}
Probab=7.05 E-value=72 Score=12.52 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=22.5
Q ss_pred CCEEEEEEECCCCCH-------HHHHHHHHCCCEEEEEHHHHHHHHH
Q ss_conf 566899850357753-------7999872039869983655045563
Q gi|254781027|r 13 SHYLAVGEINLDGSL-------PAAICAKNMNKDFICPQSCGSEAAW 52 (108)
Q Consensus 13 ~~~~~iGELsLdG~L-------p~al~a~~~~~~~iiP~~N~~Ea~l 52 (108)
..|+|.= +++.+ |++.-.-+.|.++|+|.+.+.++.+
T Consensus 20 g~yVF~t---~~~~~~~~~~l~pia~F~E~EGlTlIl~~~~A~~~gL 63 (66)
T d1zvpa1 20 GDYVFCT---VNGALSDYLSLEPIATFREPEGLTLVLEAEKAQQAGL 63 (66)
T ss_dssp SCEEEEE---ECSCGGGGGGGCCSEEEEETTEEEEEEEHHHHHHTTC
T ss_pred CCEEEEE---ECCCCCCCCCCCEEEEEEECCCEEEEEEHHHHHHCCC
T ss_conf 9689999---8885456557862499995783599989999988399
No 9
>d2ex3b1 a.263.1.1 (B:71-259) DNA terminal protein {Bacteriophage phi-29 [TaxId: 10756]}
Probab=7.01 E-value=77 Score=12.34 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=16.0
Q ss_pred CCCCCCCCCCHHHHCCHHHHHC
Q ss_conf 4467656998767158466300
Q gi|254781027|r 85 TYKKRDNLPNFAEIKGQKTIKR 106 (108)
Q Consensus 85 ~~~~~~~~~Df~dV~GQ~~aKR 106 (108)
+.....+..||++|+-|+.-+|
T Consensus 70 tG~~Rp~DFdF~kVrsy~rLrt 91 (189)
T d2ex3b1 70 TGINRPHDFDFSKVRSYSRLRT 91 (189)
T ss_dssp CCCCCCCCCCGGGCCSHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHH
T ss_conf 6879800178188887888989
No 10
>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]}
Probab=6.52 E-value=82 Score=12.21 Aligned_cols=15 Identities=47% Similarity=0.457 Sum_probs=11.9
Q ss_pred HCCEEEEEEECCCCC
Q ss_conf 356689985035775
Q gi|254781027|r 12 FSHYLAVGEINLDGS 26 (108)
Q Consensus 12 l~~~~~iGELsLdG~ 26 (108)
..+.+.+||.|||-.
T Consensus 89 ~~~~v~iGEiGld~~ 103 (259)
T d1zzma1 89 PAKVVAVGEIGLDLF 103 (259)
T ss_dssp CSSEEEEEEEEEECC
T ss_pred CCCCCEECCCCCCCC
T ss_conf 752101032321122
Done!