RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781027|ref|YP_003065440.1| hypothetical protein
CLIBASIA_04645 [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)



>gnl|CDD|30951 COG0606, COG0606, Predicted ATPase with chaperone activity
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 490

 Score = 80.7 bits (199), Expect = 8e-17
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 10/117 (8%)

Query: 1   MASIQAISTESFSHYLAVGEINLDGS-------LPAAICAKNMN-KDFICPQSCGSEAAW 52
           +A+   +  ++   Y  +GE++LDG        LPAA+ AK    +  I P+    EA+ 
Sbjct: 76  LAASGQLPADALILYEFLGELSLDGLLRPVGGVLPAALAAKEKGKRGLIVPKENAEEASL 135

Query: 53  ASDSLRIVAPSTLLELINHLNNKQLLPQPCKST-YKKRDNLPNFAEIKGQKTIKRAL 108
               L +     L E++N L  K  LP P  S   +     P+F ++KGQ+  KRAL
Sbjct: 136 IGG-LPVYGARYLEEVVNFLEGKLRLPIPIPSEVIESFSLAPDFKDVKGQEQAKRAL 191


>gnl|CDD|36679 KOG1466, KOG1466, KOG1466, Translation initiation factor 2B, alpha
           subunit (eIF-2Balpha/GCN3) [Translation, ribosomal
           structure and biogenesis].
          Length = 313

 Score = 27.2 bits (60), Expect = 1.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 19  GEINLDGSLPAAICAKNMNKDF 40
           G IN  G+   A+CAK+MNK F
Sbjct: 214 GIINKIGTYQVAVCAKSMNKPF 235


>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI.
           Magnesium-chelatase is a three-component enzyme that
           catalyses the insertion of Mg2+ into protoporphyrin IX.
           This is the first unique step in the synthesis of
           (bacterio)chlorophyll. Due to this, it is thought that
           Mg-chelatase has an important role in channelling inter-
           mediates into the (bacterio)chlorophyll branch in
           response to conditions suitable for photosynthetic
           growth. ChlI and BchD have molecular weight between
           38-42 kDa.
          Length = 207

 Score = 24.8 bits (55), Expect = 4.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 95  FAEIKGQKTIKRAL 108
            A++KGQ+  KRAL
Sbjct: 2   LADVKGQEQAKRAL 15


>gnl|CDD|31250 COG1049, AcnB, Aconitase B [Energy production and conversion].
          Length = 852

 Score = 24.1 bits (52), Expect = 9.0
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 1   MASIQAISTESFSHYLAVGEINLDGSLPAAICAKNMNKD 39
           +A+ + +  ++ + Y AV EI+L       + A N   D
Sbjct: 643 LANPELLEADADAEYAAVIEIDLADIKEPILAAPNDPDD 681


>gnl|CDD|133012 cd02520, Glucosylceramide_synthase, Glucosylceramide synthase
           catalyzes the first glycosylation step of
           glycosphingolipid synthesis.
           UDP-glucose:N-acylsphingosine D-glucosyltransferase
           (glucosylceramide synthase or ceramide
           glucosyltransferase) catalyzes the first glycosylation
           step of glycosphingolipid synthesis. Its product,
           glucosylceramide, serves as the core of more than 300
           glycosphingolipids (GSL). GSLs are a group of membrane
           components that have the lipid portion embedded in the
           outer plasma membrane leaflet and the sugar chains
           extended to the outer environment. Several lines of
           evidence suggest the importance of GSLs in various
           cellular processes such as differentiation, adhesion,
           proliferation, and cell-cell recognition. In pathogenic
           fungus Cryptococcus neoformans,  glucosylceramide serves
           as an antigen that elicits an antibody response in
           patients and it is essential for fungal growth in host
           extracellular environment.
          Length = 196

 Score = 24.1 bits (53), Expect = 9.7
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 47  GSEAA-----WASDSLRIVAPSTLLELINHLNNKQ--LLPQPC---KSTYKKRDNL 92
           G E A       SDS   V P  L  ++  L +    L+   C   KS   +R+ L
Sbjct: 81  GYEEARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCLCAFGKSMALRREVL 136


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.316    0.129    0.379 

Gapped
Lambda     K      H
   0.267   0.0693    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,211,834
Number of extensions: 51146
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 11
Length of query: 108
Length of database: 6,263,737
Length adjustment: 75
Effective length of query: 33
Effective length of database: 4,643,062
Effective search space: 153221046
Effective search space used: 153221046
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)