RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781027|ref|YP_003065440.1| hypothetical protein CLIBASIA_04645 [Candidatus Liberibacter asiaticus str. psy62] (108 letters) >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333 Score = 28.7 bits (63), Expect = 0.14 Identities = 7/14 (50%), Positives = 10/14 (71%) Query: 95 FAEIKGQKTIKRAL 108 F+ I GQ+ +K AL Sbjct: 6 FSAIVGQEDMKLAL 19 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.316 0.129 0.379 Gapped Lambda K H 0.267 0.0674 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 373,762 Number of extensions: 14299 Number of successful extensions: 21 Number of sequences better than 10.0: 1 Number of HSP's gapped: 21 Number of HSP's successfully gapped: 2 Length of query: 108 Length of database: 2,407,596 Length adjustment: 68 Effective length of query: 40 Effective length of database: 1,473,956 Effective search space: 58958240 Effective search space used: 58958240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.0 bits)