Query gi|254781028|ref|YP_003065441.1| putative Mg2+ chelatase family protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 87
No_of_seqs 100 out of 998
Neff 4.1
Searched_HMMs 33803
Date Wed Jun 1 21:00:02 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781028.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1rre_A ATP-dependent protease 98.8 2E-08 5.8E-13 70.7 7.6 78 1-78 10-89 (200)
2 >1z0w_A Putative protease LA h 98.5 3.1E-07 9.3E-12 63.7 7.6 70 4-77 14-88 (207)
3 >1xhk_A Putative protease LA h 96.9 0.00011 3.3E-09 48.7 -0.6 69 3-76 7-89 (187)
4 >2wfg_A Cytosolic leucyl-tRNA 47.4 8.5 0.00025 20.1 1.4 31 33-63 135-165 (175)
5 >1we3_A CPN60(groel); chaperon 45.4 26 0.00077 17.2 3.7 32 24-55 88-119 (131)
6 >1tt9_A Formimidoyltransferase 44.1 27 0.00081 17.1 4.8 53 14-66 32-84 (180)
7 >1qd1_A Formiminotransferase-c 38.7 33 0.00099 16.6 6.8 54 14-67 31-84 (179)
8 >3e3a_A Possible peroxidase BP 35.3 13 0.00037 19.1 0.7 34 40-78 4-42 (78)
9 >1zt2_B DNA primase large subu 29.5 12 0.00035 19.3 -0.2 32 26-57 23-54 (156)
10 >1sjp_A Chaperonin60, 60 kDa c 23.0 63 0.0019 15.0 3.4 40 15-54 42-82 (89)
11 >1brw_A PYNP, protein (pyrimid 21.7 15 0.00043 18.7 -0.9 35 49-83 59-106 (191)
12 >1vjo_A Alanine--glyoxylate am 21.5 67 0.002 14.8 3.4 39 39-77 50-89 (145)
13 >1h70_A NG, NG-dimethylarginin 21.2 59 0.0018 15.1 2.1 36 31-66 12-47 (49)
14 >1w9y_A 1-aminocyclopropane-1- 20.5 53 0.0016 15.4 1.7 37 27-63 3-39 (294)
15 >1iok_A Chaperonin 60; chapero 20.3 72 0.0021 14.7 2.6 38 17-54 45-83 (93)
16 >2vj4_A Protein MXIC, MXIC; se 20.2 36 0.0011 16.5 0.8 17 70-86 21-37 (79)
No 1
>>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET: MSE; 1.75A {Escherichia coli} (A:)
Probab=98.79 E-value=2e-08 Score=70.73 Aligned_cols=78 Identities=9% Similarity=0.109 Sum_probs=70.6
Q ss_pred CEEEEEEEEEEEEEEEEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCEEEEEEECHHHH
Q ss_conf 9369999999733017899999846897437996162588899989999999977984421--12894047996375889
Q gi|254781028|r 1 MISRISTIAFQGIKGIPVEVQVMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLV--NELPSIYLQLIYQKKDL 78 (87)
Q Consensus 1 Mlski~S~al~Gi~a~~V~VEv~is~GlP~f~iVGLpD~aVkESreRVrsAl~nsGl~F~~--~~~p~~~~tinl~p~dl 78 (87)
|+.++++.++.|.+++++.||+...+|.|.+.++|+++...+|+++|+++|+.+.+..+.. ..+|..++++|+++.|.
T Consensus 10 ~~g~v~~~~v~~~~~~~~~iE~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~i~~~~~~~ 89 (200)
T 1rre_A 10 RVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVXQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGAT 89 (200)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEEEEECSSCEEEESSBCHHHHHHHHHHHHHHHHTHHHHTCCTTTTTSEEEEEECSSTTS
T ss_pred CCEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEECCCCC
T ss_conf 62799877995799877999999982688632234554012578999999999986650677013322303454214654
No 2
>>1z0w_A Putative protease LA homolog type; ATP-dependent protease, catalytic Ser-Lys DYAD, B-type LON, hydrolase; 1.20A {Archaeoglobus fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A 1z0g_A 1z0t_A 1z0v_A (A:)
Probab=98.54 E-value=3.1e-07 Score=63.67 Aligned_cols=70 Identities=13% Similarity=0.089 Sum_probs=59.2
Q ss_pred EEEEEEEE-----EEEEEEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECHHH
Q ss_conf 99999997-----330178999998468974379961625888999899999999779844211289404799637588
Q gi|254781028|r 4 RISTIAFQ-----GIKGIPVEVQVMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLVNELPSIYLQLIYQKKD 77 (87)
Q Consensus 4 ki~S~al~-----Gi~a~~V~VEv~is~GlP~f~iVGLpD~aVkESreRVrsAl~nsGl~F~~~~~p~~~~tinl~p~d 77 (87)
.+++.++. |+.+.++++|++.++|.|.+.++|+|+...+||.+|+.+++++.+- ..++..++++|+.|.+
T Consensus 14 ~v~~~av~~~g~~~~~~~~~~ie~~~~~g~~~~~~~g~~~~~~~es~~~~~~~l~~~~~----~~~~~~~~~i~~~~~~ 88 (207)
T 1z0w_A 14 RVNGLAVIGESAGIVLPIIAEVTPSMSKSEGRVIATGRLQEIAREAVMNVSAIIKKYTG----RDISNMDVHIQFVGTY 88 (207)
T ss_dssp EEEEEEEETTTEEEEEEEEEEEEECC---CCCEECCSTTHHHHHHHHHHHHHHHHHHHC----CCGGGEEEEEEESSCC
T ss_pred EEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCCCCC
T ss_conf 99786998766977899999999633378873897486225788888999999976310----1344544002025311
No 3
>>1xhk_A Putative protease LA homolog; LON protease, ATP dependent, catalytic DYAD, hydrolase; HET: MES; 1.90A {Methanocaldococcus jannaschii} (A:)
Probab=96.95 E-value=0.00011 Score=48.74 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=53.3
Q ss_pred EEEEEEEEEEEE----EEEEEEEEE--CCCCCCEEEEEE--------CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
Q ss_conf 699999997330----178999998--468974379961--------625888999899999999779844211289404
Q gi|254781028|r 3 SRISTIAFQGIK----GIPVEVQVM--VSPGRVGVQIVG--------LPDKAVIESRERIQSHFIHAGLLFLVNELPSIY 68 (87)
Q Consensus 3 ski~S~al~Gi~----a~~V~VEv~--is~GlP~f~iVG--------LpD~aVkESreRVrsAl~nsGl~F~~~~~p~~~ 68 (87)
.+++..++.... ...+++++. .+.++|.+.++| ++++.+++.++|+++++++.|+ .||..+
T Consensus 7 g~v~G~av~~~~~~~~~~~iev~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~ 81 (187)
T 1xhk_A 7 GVIYGLAVLGAGGIGDVTKIIVQILESKNPGTHLLNISGDIAKHSITLASALSKKLVAEKKLPLPKKDI-----DLNNKE 81 (187)
T ss_dssp TEEEEEECCSSSSCCEEEEEEEEEEECSSCEEEEESSCHHHHHHHHHHHHHHHHHHHHTTSSCCCSSCC-----CSTTEE
T ss_pred EEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----CCCCCC
T ss_conf 899889997899977539999999966789745450554355677888999999999862888784435-----546000
Q ss_pred EEEEECHH
Q ss_conf 79963758
Q gi|254781028|r 69 LQLIYQKK 76 (87)
Q Consensus 69 ~tinl~p~ 76 (87)
+++|+.+.
T Consensus 82 i~i~~~~~ 89 (187)
T 1xhk_A 82 IYIQFSQS 89 (187)
T ss_dssp EEEEESSC
T ss_pred EEEECCHH
T ss_conf 46734411
No 4
>>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* (A:1-140,A:227-261)
Probab=47.42 E-value=8.5 Score=20.09 Aligned_cols=31 Identities=26% Similarity=0.609 Sum_probs=27.0
Q ss_pred EEECCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9616258889998999999997798442112
Q gi|254781028|r 33 IVGLPDKAVIESRERIQSHFIHAGLLFLVNE 63 (87)
Q Consensus 33 iVGLpD~aVkESreRVrsAl~nsGl~F~~~~ 63 (87)
+-+-|...|+|+|..||+-+.-+|..|.-.|
T Consensus 135 Vh~aPa~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
T 2wfg_A 135 VTCVPSDKVEDAKPKVKQDLIDEGLAFVYNE 165 (175)
T ss_dssp EEECTTSBHHHHHHHHHHHHHHTTSEEEECC
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 8966885999999999999986899566618
No 5
>>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} (A:137-189,A:336-413)
Probab=45.41 E-value=26 Score=17.24 Aligned_cols=32 Identities=9% Similarity=0.230 Sum_probs=27.1
Q ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf 46897437996162588899989999999977
Q gi|254781028|r 24 VSPGRVGVQIVGLPDKAVIESRERIQSHFIHA 55 (87)
Q Consensus 24 is~GlP~f~iVGLpD~aVkESreRVrsAl~ns 55 (87)
++.|...+.+-|--+..++|-|+|+.-|+...
T Consensus 88 LsGgvAvI~VGg~Te~E~kErk~R~eDAl~A~ 119 (131)
T 1we3_A 88 LAGGVAVIRVGAATETELKEKKHRFEDALNAT 119 (131)
T ss_dssp HTTCEEEEEECCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 57865999968887889999999999999999
No 6
>>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A (A:1-180)
Probab=44.11 E-value=27 Score=17.12 Aligned_cols=53 Identities=17% Similarity=0.092 Sum_probs=46.2
Q ss_pred EEEEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 01789999984689743799616258889998999999997798442112894
Q gi|254781028|r 14 KGIPVEVQVMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLVNELPS 66 (87)
Q Consensus 14 ~a~~V~VEv~is~GlP~f~iVGLpD~aVkESreRVrsAl~nsGl~F~~~~~p~ 66 (87)
....++++.|..-.-..|++||-|+.-..-.-.=++.|+....+..|.-+-|-
T Consensus 32 gv~lld~~~D~d~NRsv~Tlvg~~~~v~~aa~~~~~~A~~~IDm~~H~G~HPR 84 (180)
T 1tt9_A 32 GCVLLDVDAGPSTNRTVYTFVGQPECVVEGALSAARTASQLIDXRKHKGEHPR 84 (180)
T ss_pred CCEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 96896079999889846997069378999999999999985574447787998
No 7
>>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrostatically charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} (A:1-179)
Probab=38.65 E-value=33 Score=16.61 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=47.3
Q ss_pred EEEEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf 017899999846897437996162588899989999999977984421128940
Q gi|254781028|r 14 KGIPVEVQVMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLVNELPSI 67 (87)
Q Consensus 14 ~a~~V~VEv~is~GlP~f~iVGLpD~aVkESreRVrsAl~nsGl~F~~~~~p~~ 67 (87)
....++++.|..-.-..|++||-|+.-..-.-.=++.|+....+..|.-+-|-.
T Consensus 31 gv~lld~~~D~d~NRsv~Tlvg~~~~v~~a~~~~~~~A~~~IDm~~H~G~HPR~ 84 (179)
T 1qd1_A 31 GCVLLDVDSGPSTNRTVYTFVGRPEDVVEGALNAARAAYQLIDMSRHHGEHPRM 84 (179)
T ss_dssp TCEEEEEEEETTTTEEEEEEEECHHHHHHHHHHHHHHHHHHCCGGGCCCSSCCS
T ss_pred CCEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCC
T ss_conf 968972789999897179996580899999999999998753422135778877
No 8
>>3e3a_A Possible peroxidase BPOC; alpha/beta hydrolase, oxidoreductase; 2.35A {Mycobacterium tuberculosis} (A:146-223)
Probab=35.29 E-value=13 Score=19.09 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEE-----EEEEECHHHH
Q ss_conf 88999899999999779844211289404-----7996375889
Q gi|254781028|r 40 AVIESRERIQSHFIHAGLLFLVNELPSIY-----LQLIYQKKDL 78 (87)
Q Consensus 40 aVkESreRVrsAl~nsGl~F~~~~~p~~~-----~tinl~p~dl 78 (87)
.+++.--|-..++.-+|. ++|+.| ..-||||+-|
T Consensus 4 ~~r~~~~~aE~eL~dsGv-----~LPp~Y~A~vral~nlSP~TL 42 (78)
T 3e3a_A 4 RARQFFNKAEAELYDSGV-----QLPPTYDARARLLENFSRKTL 42 (78)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCCHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHHCCC
T ss_conf 034566788998876541-----044135688999887401013
No 9
>>1zt2_B DNA primase large subunit; heterodimeric complex, replication, transferase; HET: DNA; 3.33A {Sulfolobus solfataricus} (B:1-115,B:172-212)
Probab=29.54 E-value=12 Score=19.26 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=25.8
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89743799616258889998999999997798
Q gi|254781028|r 26 PGRVGVQIVGLPDKAVIESRERIQSHFIHAGL 57 (87)
Q Consensus 26 ~GlP~f~iVGLpD~aVkESreRVrsAl~nsGl 57 (87)
.|..--.++..++.++..++|||++|+..-.+
T Consensus 23 ~gisL~dll~~~~~averA~eRV~~al~~~~~ 54 (156)
T 1zt2_B 23 GGITLTDLLLNSTTLIDQAKDRIQKTKSGDEL 54 (156)
T ss_dssp SSCCHHHHHHHCSHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 78788885366279999999999999718988
No 10
>>1sjp_A Chaperonin60, 60 kDa chaperonin 2; chaperone, structural genomics, PSI, protein structure initiative; 3.20A {Mycobacterium tuberculosis} (A:95-147,A:330-365)
Probab=23.01 E-value=63 Score=15.01 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=30.0
Q ss_pred EEEEEEEEECCC-CCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 178999998468-9743799616258889998999999997
Q gi|254781028|r 15 GIPVEVQVMVSP-GRVGVQIVGLPDKAVIESRERIQSHFIH 54 (87)
Q Consensus 15 a~~V~VEv~is~-GlP~f~iVGLpD~aVkESreRVrsAl~n 54 (87)
+...+-|.++.. |.-...+-|--+...+|-|+|+.-|+..
T Consensus 42 ~k~~~t~levvEGGvA~i~vGa~Te~e~~e~k~r~eDA~~A 82 (89)
T 1sjp_A 42 SNTFGLQLELTEGGVAVIKAGAATEVELKERKHRIEDAVRN 82 (89)
T ss_dssp ESSSSEEEEEESHCEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 48875489998786599995898588999999999989999
No 11
>>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement; HET: MES; 2.10A {Bacillus stearothermophilus} (A:1-94,A:156-242,A:424-433)
Probab=21.73 E-value=15 Score=18.72 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=21.4
Q ss_pred HHHHHHCCCCCCCCCC-------------CCEEEEEEECHHHHHHHHH
Q ss_conf 9999977984421128-------------9404799637588999888
Q gi|254781028|r 49 QSHFIHAGLLFLVNEL-------------PSIYLQLIYQKKDLIMIYL 83 (87)
Q Consensus 49 rsAl~nsGl~F~~~~~-------------p~~~~tinl~p~dl~~~~~ 83 (87)
-.|++++|-++-.-+. +...+.|||+|||.+++-+
T Consensus 59 a~Am~~~g~~i~~~~~~~~~vDi~GTGGDG~~T~nI~l~pad~~~~~~ 106 (191)
T 1brw_A 59 TMAMVQSGEMLDLSSIRGVKVDKHSTGGVGDTTTLVDLTPADKKLYAL 106 (191)
T ss_dssp HHHHHHTSCCCCCTTSCSCCEEEEECCCSSCCHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEHHHHCCCHHHHHHHHH
T ss_conf 999998589787755689841677999987402788037677776533
No 12
>>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, structural genomics, JCSG, PSI, protein structure initiative; HET: PLP; 1.70A {Nostoc SP} (A:1-43,A:292-393)
Probab=21.50 E-value=67 Score=14.83 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC-CCCEEEEEEECHHH
Q ss_conf 8889998999999997798442112-89404799637588
Q gi|254781028|r 39 KAVIESRERIQSHFIHAGLLFLVNE-LPSIYLQLIYQKKD 77 (87)
Q Consensus 39 ~aVkESreRVrsAl~nsGl~F~~~~-~p~~~~tinl~p~d 77 (87)
+.-++-.+.+|.++...||.++..+ +++--+|--..|.+
T Consensus 50 aRh~~~a~~lr~gL~~lGl~~~~~~~~~S~~VTav~~Peg 89 (145)
T 1vjo_A 50 QRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDG 89 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHCCCCEEECCHHHHCCEEEEEECCCC
T ss_conf 4201133434545423781682683870975999989999
No 13
>>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric oxide synthase inhibitor; HET: CIR; 1.8A {Pseudomonas aeruginosa} (A:114-162)
Probab=21.25 E-value=59 Score=15.14 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=31.2
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 799616258889998999999997798442112894
Q gi|254781028|r 31 VQIVGLPDKAVIESRERIQSHFIHAGLLFLVNELPS 66 (87)
Q Consensus 31 f~iVGLpD~aVkESreRVrsAl~nsGl~F~~~~~p~ 66 (87)
--.||+-+.+=.|+-+.+++++...|+.....++|.
T Consensus 12 ~v~VG~S~RTn~~gv~~l~~~l~~~g~~vi~v~~p~ 47 (49)
T 1h70_A 12 HFYIGESARTNAEGARQMIAILEKHGLSGSVVRLEK 47 (49)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 089999405637889999998875486699934510
No 14
>>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} (A:1-294)
Probab=20.54 E-value=53 Score=15.44 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=29.2
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9743799616258889998999999997798442112
Q gi|254781028|r 27 GRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLVNE 63 (87)
Q Consensus 27 GlP~f~iVGLpD~aVkESreRVrsAl~nsGl~F~~~~ 63 (87)
-+|.+.+-.+-+..-.|..+.++.|.++.||-.++|-
T Consensus 3 ~iPvIDLs~~~s~d~~~~~~~l~~A~~~~GfF~l~nh 39 (294)
T 1w9y_A 3 NFPIISLDKVNGVERAATXEXIKDACENWGFFELVNH 39 (294)
T ss_dssp CCCEEEGGGGGSTTHHHHHHHHHHHHHHTSEEEEESC
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHCCEEEEEECC
T ss_conf 9983888468997899999999999970938999908
No 15
>>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} (A:138-192,A:375-412)
Probab=20.25 E-value=72 Score=14.67 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=27.2
Q ss_pred EEEEEEECCCCC-CEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 899999846897-43799616258889998999999997
Q gi|254781028|r 17 PVEVQVMVSPGR-VGVQIVGLPDKAVIESRERIQSHFIH 54 (87)
Q Consensus 17 ~V~VEv~is~Gl-P~f~iVGLpD~aVkESreRVrsAl~n 54 (87)
..+.+.++..|- -...+-|--....+|-|+|+.-|+..
T Consensus 45 ~~~~~levvEGgvAvi~vG~~Te~e~ke~k~r~eDA~~A 83 (93)
T 1iok_A 45 GMETEVEVVEGGVAVIRVGGMTEIEVKERKDRVDDALNA 83 (93)
T ss_dssp SSCCEEEEECCCEEEEEECCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 976247998066599996899899999999989999999
No 16
>>2vj4_A Protein MXIC, MXIC; secretion regulation, transport protein, T3SS, plasmid, virulence, transport, type three secretion system; HET: MLY; 2.50A {Shigella flexneri} PDB: 2vix_A* 2vj5_A (A:92-170)
Probab=20.20 E-value=36 Score=16.45 Aligned_cols=17 Identities=18% Similarity=0.334 Sum_probs=14.8
Q ss_pred EEEECHHHHHHHHHHHH
Q ss_conf 99637588999888861
Q gi|254781028|r 70 QLIYQKKDLIMIYLSFL 86 (87)
Q Consensus 70 tinl~p~dl~~~~~~~~ 86 (87)
.++++|.+|-+.|.+|+
T Consensus 21 ~l~l~a~~LR~~Yr~Fl 37 (79)
T 2vj4_A 21 XMXLEPQLLRACYRGFI 37 (79)
T ss_dssp HHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
T ss_conf 44347999999999998
Done!