Query gi|254781028|ref|YP_003065441.1| putative Mg2+ chelatase family protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 87
No_of_seqs 100 out of 998
Neff 4.1
Searched_HMMs 23785
Date Wed Jun 1 00:57:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781028.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xhk_A Putative protease LA ho 97.8 6.3E-05 2.7E-09 49.3 7.2 76 2-77 6-90 (187)
2 1rre_A ATP-dependent protease 96.8 0.0047 2E-07 38.3 7.4 75 2-76 11-87 (200)
3 3m6a_A ATP-dependent protease 96.7 0.011 4.5E-07 36.2 8.7 73 2-74 354-428 (543)
4 2x36_A LON protease homolog, m 96.3 0.0045 1.9E-07 38.4 4.7 75 2-76 10-95 (207)
5 1z0w_A Putative protease LA ho 95.9 0.017 7E-07 35.1 6.3 70 2-76 12-87 (207)
6 1j3m_A The conserved hypotheti 31.7 19 0.00079 17.2 1.9 22 38-59 9-30 (129)
7 1qd1_A Formiminotransferase-cy 28.6 35 0.0015 15.6 6.8 52 15-66 32-83 (325)
8 3mr0_A Sensory box histidine k 25.0 22 0.00091 16.8 1.2 34 39-72 2-35 (142)
9 1tt9_A Formimidoyltransferase- 22.2 46 0.0019 14.9 4.8 52 15-66 33-84 (541)
10 1w9y_A 1-aminocyclopropane-1-c 19.6 45 0.0019 15.0 2.0 36 27-62 3-38 (319)
No 1
>1xhk_A Putative protease LA homolog; LON protease, ATP dependent, catalytic DYAD, hydrolase; HET: MES; 1.90A {Methanocaldococcus jannaschii} SCOP: d.14.1.10
Probab=97.79 E-value=6.3e-05 Score=49.28 Aligned_cols=76 Identities=11% Similarity=0.171 Sum_probs=53.8
Q ss_pred EEEEEEEEEEEE--EEEEEEEEEECCCCC-CEEEEEEC----CHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCEEEEEE
Q ss_conf 369999999733--017899999846897-43799616----25888999899999999779844211--2894047996
Q gi|254781028|r 2 ISRISTIAFQGI--KGIPVEVQVMVSPGR-VGVQIVGL----PDKAVIESRERIQSHFIHAGLLFLVN--ELPSIYLQLI 72 (87)
Q Consensus 2 lski~S~al~Gi--~a~~V~VEv~is~Gl-P~f~iVGL----pD~aVkESreRVrsAl~nsGl~F~~~--~~p~~~~tin 72 (87)
+++++..+..+. .+.++.+|+++..|. |+...+|+ ++.+++++++|+++++.+.++.+... .++...+++|
T Consensus 6 vG~vnGLav~~~G~~G~~~~ie~~v~~~~~~g~~~~~~~G~v~keSv~~A~~~v~~~~~~~~~~~~~~~~~~~~~di~i~ 85 (187)
T 1xhk_A 6 VGVIYGLAVLGAGGIGDVTKIIVQILESKNPGTHLLNISGDIAKHSITLASALSKKLVAEKKLPLPKKDIDLNNKEIYIQ 85 (187)
T ss_dssp TTEEEEEECCSSSSCCEEEEEEEEEEECSSCEEEEESSCHHHHHHHHHHHHHHHHHHHHTTSSCCCSSCCCSTTEEEEEE
T ss_pred EEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE
T ss_conf 18998999978998775599999999767897036863057889999999999999998629987844466656328999
Q ss_pred ECHHH
Q ss_conf 37588
Q gi|254781028|r 73 YQKKD 77 (87)
Q Consensus 73 l~p~d 77 (87)
+.|++
T Consensus 86 ~~~~~ 90 (187)
T 1xhk_A 86 FSQSY 90 (187)
T ss_dssp ESSCC
T ss_pred ECCCC
T ss_conf 37987
No 2
>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET: MSE; 1.75A {Escherichia coli} SCOP: d.14.1.10 PDB: 1rr9_A*
Probab=96.78 E-value=0.0047 Score=38.29 Aligned_cols=75 Identities=11% Similarity=0.143 Sum_probs=60.2
Q ss_pred EEEEEEEEEEEEEEEEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCEEEEEEECHH
Q ss_conf 3699999997330178999998468974379961625888999899999999779844211--28940479963758
Q gi|254781028|r 2 ISRISTIAFQGIKGIPVEVQVMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLVN--ELPSIYLQLIYQKK 76 (87)
Q Consensus 2 lski~S~al~Gi~a~~V~VEv~is~GlP~f~iVGLpD~aVkESreRVrsAl~nsGl~F~~~--~~p~~~~tinl~p~ 76 (87)
+.+++..++....+.++.||+...+|...+.++|..+...+|+..+..++..+....+... .++...+.+|+.+.
T Consensus 11 VG~VnGLaV~~~gG~~l~IE~~~~~g~g~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 87 (200)
T 1rre_A 11 VGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEG 87 (200)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEEEECSSCEEEESSBCHHHHHHHHHHHHHHHHTHHHHTCCTTTTTSEEEEEECSST
T ss_pred EEEEEEEEEECCCCEEEEEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC
T ss_conf 08999759978999899999999737785154242100125788999999999999838874321025179996577
No 3
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, cytoplasm, hydrolase, nucleotide-B protease, serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.70 E-value=0.011 Score=36.23 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=62.7
Q ss_pred EEEEEEEEEEEEEEEEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCEEEEEEEC
Q ss_conf 3699999997330178999998468974379961625888999899999999779844211--289404799637
Q gi|254781028|r 2 ISRISTIAFQGIKGIPVEVQVMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLVN--ELPSIYLQLIYQ 74 (87)
Q Consensus 2 lski~S~al~Gi~a~~V~VEv~is~GlP~f~iVGLpD~aVkESreRVrsAl~nsGl~F~~~--~~p~~~~tinl~ 74 (87)
++.+++.+..|..+..+.+|+...+|...+.++|..+...|||.....|.+++....|-.. .+....|.||..
T Consensus 354 vGvv~GLa~t~~GG~il~iE~~~~~G~g~l~lTG~lG~vmkES~~~A~s~~~~~~~~~~i~~~~~~~~dIHih~p 428 (543)
T 3m6a_A 354 VGVVTGLAYTTVGGDTLSIEVSLSPGKGKLILTGKLGDVMRESAQAAFSYVRSKTEELGIEPDFHEKYDIHIHVP 428 (543)
T ss_dssp SSEEEEEEEETTEEEEEEEEEEEESSCSCEEEEESCCHHHHHHHHHHHHHHTSSCGGGSSCSSCTTTCEEEEEEC
T ss_pred CCEEEEEEEECCCCCEEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCEEEECC
T ss_conf 865888778736885389998750898861121127799999999999999988998788915644133567347
No 4
>2x36_A LON protease homolog, mitochondrial; hydrolase, catalytic DYAD, transit peptide; 2.00A {Homo sapiens} PDB: 2x36_C
Probab=96.28 E-value=0.0045 Score=38.40 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=56.1
Q ss_pred EEEEEEEEEEEEEEEEEEEEEECCCCC---------CEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCEEEE
Q ss_conf 369999999733017899999846897---------437996162588899989999999977984421--128940479
Q gi|254781028|r 2 ISRISTIAFQGIKGIPVEVQVMVSPGR---------VGVQIVGLPDKAVIESRERIQSHFIHAGLLFLV--NELPSIYLQ 70 (87)
Q Consensus 2 lski~S~al~Gi~a~~V~VEv~is~Gl---------P~f~iVGLpD~aVkESreRVrsAl~nsGl~F~~--~~~p~~~~t 70 (87)
.++++..+..+..+.++.||+.+.+|. ..+.++|......+||..+.++.+++....+.. ..|+...++
T Consensus 10 ~G~v~GLavt~~GG~~l~IE~~~~~~~~~~~~~~g~G~l~~tG~~g~~~keS~~~a~~~~k~~~~~~~~~~~~~~~~di~ 89 (207)
T 2x36_A 10 PGVVMGLAWTAMGGSTLFVETSLRRPQDKDAKGDKDGSLEVTGQLGEVMKESARIAYTFARAFLMQHAPANDYLVTSHIH 89 (207)
T ss_dssp TTEEEEEEEBSSSEEEEEEEEEESSCCC--------CEEEEESCCCHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHCEEE
T ss_pred CEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 91999989977898289999998617665555578348999540178888899999999999888747564310022279
Q ss_pred EEECHH
Q ss_conf 963758
Q gi|254781028|r 71 LIYQKK 76 (87)
Q Consensus 71 inl~p~ 76 (87)
+|+.+.
T Consensus 90 i~~~~~ 95 (207)
T 2x36_A 90 LHVPEG 95 (207)
T ss_dssp EECCSC
T ss_pred EEECCC
T ss_conf 995688
No 5
>1z0w_A Putative protease LA homolog type; ATP-dependent protease, catalytic Ser-Lys DYAD, B-type LON, hydrolase; 1.20A {Archaeoglobus fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A 1z0g_A 1z0t_A 1z0v_A
Probab=95.95 E-value=0.017 Score=35.09 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=52.6
Q ss_pred EEEEEEEEEEE-EEEEEEEEEEEC----CCCCCEEEEEECCHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCEEEEEEECH
Q ss_conf 36999999973-301789999984----68974379961625888999899999999-7798442112894047996375
Q gi|254781028|r 2 ISRISTIAFQG-IKGIPVEVQVMV----SPGRVGVQIVGLPDKAVIESRERIQSHFI-HAGLLFLVNELPSIYLQLIYQK 75 (87)
Q Consensus 2 lski~S~al~G-i~a~~V~VEv~i----s~GlP~f~iVGLpD~aVkESreRVrsAl~-nsGl~F~~~~~p~~~~tinl~p 75 (87)
+++++..++.+ ..+.+..+|+.+ +.|.+.+.++|......+||..++.+.++ ++|+ .++...+.+|+.+
T Consensus 12 vG~VnGLaV~~~~~G~~~~Ie~~v~~~~~~g~g~~~~tg~~~~~~~es~~~a~a~l~~~~~~-----~~~~~di~i~~~~ 86 (207)
T 1z0w_A 12 VGRVNGLAVIGESAGIVLPIIAEVTPSMSKSEGRVIATGRLQEIAREAVMNVSAIIKKYTGR-----DISNMDVHIQFVG 86 (207)
T ss_dssp TTEEEEEEEETTTEEEEEEEEEEEEECC---CCCEECCSTTHHHHHHHHHHHHHHHHHHHCC-----CGGGEEEEEEESS
T ss_pred EEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCC-----CCCCCEEEEEECC
T ss_conf 99997889988768789999999997433787729981754788999999999999985245-----7556649999668
Q ss_pred H
Q ss_conf 8
Q gi|254781028|r 76 K 76 (87)
Q Consensus 76 ~ 76 (87)
.
T Consensus 87 ~ 87 (207)
T 1z0w_A 87 T 87 (207)
T ss_dssp C
T ss_pred C
T ss_conf 7
No 6
>1j3m_A The conserved hypothetical protein TT1751; X-RAY crystallography, structural genomics, riken structural genomics/proteomics initiative; 2.00A {Thermus thermophilus} SCOP: d.129.7.1
Probab=31.72 E-value=19 Score=17.19 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 5888999899999999779844
Q gi|254781028|r 38 DKAVIESRERIQSHFIHAGLLF 59 (87)
Q Consensus 38 D~aVkESreRVrsAl~nsGl~F 59 (87)
+.++.|+.+|+++|+++.||.-
T Consensus 9 ~~s~~e~~~~l~~~l~~~G~~V 30 (129)
T 1j3m_A 9 KATLAEARAQVEAALKEEGFGI 30 (129)
T ss_dssp SSCHHHHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHHHCCCEE
T ss_conf 5889999999999999779989
No 7
>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrostatically charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1
Probab=28.62 E-value=35 Score=15.63 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=45.3
Q ss_pred EEEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 1789999984689743799616258889998999999997798442112894
Q gi|254781028|r 15 GIPVEVQVMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLVNELPS 66 (87)
Q Consensus 15 a~~V~VEv~is~GlP~f~iVGLpD~aVkESreRVrsAl~nsGl~F~~~~~p~ 66 (87)
...++++.|..-.-..|+++|-|+.-.+-+.+=++.|+....+.-|.-+-|-
T Consensus 32 v~lLdv~~D~dyNRtv~TlvG~p~~v~~aa~~~~~~A~~~IDm~~H~G~HPR 83 (325)
T 1qd1_A 32 CVLLDVDSGPSTNRTVYTFVGRPEDVVEGALNAARAAYQLIDMSRHHGEHPR 83 (325)
T ss_dssp CEEEEEEEETTTTEEEEEEEECHHHHHHHHHHHHHHHHHHCCGGGCCCSSCC
T ss_pred CEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCC
T ss_conf 6897278999989717999638088899999999999875342313587887
No 8
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=25.02 E-value=22 Score=16.81 Aligned_cols=34 Identities=21% Similarity=0.002 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
Q ss_conf 8889998999999997798442112894047996
Q gi|254781028|r 39 KAVIESRERIQSHFIHAGLLFLVNELPSIYLQLI 72 (87)
Q Consensus 39 ~aVkESreRVrsAl~nsGl~F~~~~~p~~~~tin 72 (87)
.|.++|.+|.+.|+.++...+..-..-...+..|
T Consensus 2 ~aL~~seer~~~~~e~~~~gi~~~d~~~~~~~~n 35 (142)
T 3mr0_A 2 NALSASEERFQLAVSGASAGLWDWNPKTGAMYLS 35 (142)
T ss_dssp -------CCHHHHHHHTTCEEEEECTTTCCEEEC
T ss_pred HHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEC
T ss_conf 1899999999999983681079998994999999
No 9
>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A
Probab=22.19 E-value=46 Score=14.91 Aligned_cols=52 Identities=17% Similarity=0.118 Sum_probs=38.7
Q ss_pred EEEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 1789999984689743799616258889998999999997798442112894
Q gi|254781028|r 15 GIPVEVQVMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLVNELPS 66 (87)
Q Consensus 15 a~~V~VEv~is~GlP~f~iVGLpD~aVkESreRVrsAl~nsGl~F~~~~~p~ 66 (87)
...++|+.|..-.-..|++||-||.-..-+..=++.|+....+.-|.-+-|-
T Consensus 33 v~ll~~~~d~d~NRtv~T~vg~~~~v~~aa~~~~~~A~~~IDm~~H~G~HPR 84 (541)
T 1tt9_A 33 CVLLDVDAGPSTNRTVYTFVGQPECVVEGALSAARTASQLIDMRKHKGEHPR 84 (541)
T ss_pred CEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 7896079999889846997069278999999999999985575557787998
No 10
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=19.64 E-value=45 Score=14.95 Aligned_cols=36 Identities=17% Similarity=0.080 Sum_probs=23.7
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 974379961625888999899999999779844211
Q gi|254781028|r 27 GRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLVN 62 (87)
Q Consensus 27 GlP~f~iVGLpD~aVkESreRVrsAl~nsGl~F~~~ 62 (87)
.+|.+.+-.+-+..-.+..+.++.|.++.||-+++|
T Consensus 3 ~lPvIDls~~~~~~~~~~~~~l~~A~~~~GFF~l~N 38 (319)
T 1w9y_A 3 NFPIISLDKVNGVERAATMEMIKDACENWGFFELVN 38 (319)
T ss_dssp CCCEEEGGGGGSTTHHHHHHHHHHHHHHTSEEEEES
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHCCEEEEEEE
T ss_conf 999388824799689999999999987396899990
Done!