RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781028|ref|YP_003065441.1| putative Mg2+ chelatase family
protein [Candidatus Liberibacter asiaticus str. psy62]
         (87 letters)



>d1frfl_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit
           {Desulfovibrio fructosovorans [TaxId: 878]}
          Length = 543

 Score = 24.0 bits (51), Expect = 3.5
 Identities = 3/15 (20%), Positives = 6/15 (40%)

Query: 46  ERIQSHFIHAGLLFL 60
           + +  H +H   L  
Sbjct: 104 QYLHDHLVHFYHLHA 118


>d1yq9h1 e.18.1.1 (H:7-536) Nickel-iron hydrogenase, large subunit
           {Desulfovibrio gigas [TaxId: 879]}
          Length = 530

 Score = 24.0 bits (51), Expect = 3.7
 Identities = 3/16 (18%), Positives = 7/16 (43%)

Query: 46  ERIQSHFIHAGLLFLV 61
           + +  H +H   L  +
Sbjct: 97  QYMHDHLVHFYHLHAL 112


>d1e3db_ e.18.1.1 (B:) Nickel-iron hydrogenase, large subunit
           {Desulfovibrio desulfuricans [TaxId: 876]}
          Length = 537

 Score = 24.0 bits (51), Expect = 3.8
 Identities = 3/15 (20%), Positives = 6/15 (40%)

Query: 46  ERIQSHFIHAGLLFL 60
           + +  H +H   L  
Sbjct: 104 QFMHDHLVHFYHLHA 118


>d1wuil1 e.18.1.1 (L:19-552) Nickel-iron hydrogenase, large subunit
           {Desulfovibrio vulgaris [TaxId: 881]}
          Length = 534

 Score = 23.6 bits (50), Expect = 4.2
 Identities = 3/14 (21%), Positives = 6/14 (42%)

Query: 46  ERIQSHFIHAGLLF 59
           + +  H +H   L 
Sbjct: 101 QYLHDHIVHFYHLH 114


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.145    0.407 

Gapped
Lambda     K      H
   0.267   0.0474    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 303,780
Number of extensions: 12224
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 8
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.5 bits)