RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781028|ref|YP_003065441.1| putative Mg2+ chelatase family protein [Candidatus Liberibacter asiaticus str. psy62] (87 letters) >d1frfl_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit {Desulfovibrio fructosovorans [TaxId: 878]} Length = 543 Score = 24.0 bits (51), Expect = 3.5 Identities = 3/15 (20%), Positives = 6/15 (40%) Query: 46 ERIQSHFIHAGLLFL 60 + + H +H L Sbjct: 104 QYLHDHLVHFYHLHA 118 >d1yq9h1 e.18.1.1 (H:7-536) Nickel-iron hydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]} Length = 530 Score = 24.0 bits (51), Expect = 3.7 Identities = 3/16 (18%), Positives = 7/16 (43%) Query: 46 ERIQSHFIHAGLLFLV 61 + + H +H L + Sbjct: 97 QYMHDHLVHFYHLHAL 112 >d1e3db_ e.18.1.1 (B:) Nickel-iron hydrogenase, large subunit {Desulfovibrio desulfuricans [TaxId: 876]} Length = 537 Score = 24.0 bits (51), Expect = 3.8 Identities = 3/15 (20%), Positives = 6/15 (40%) Query: 46 ERIQSHFIHAGLLFL 60 + + H +H L Sbjct: 104 QFMHDHLVHFYHLHA 118 >d1wuil1 e.18.1.1 (L:19-552) Nickel-iron hydrogenase, large subunit {Desulfovibrio vulgaris [TaxId: 881]} Length = 534 Score = 23.6 bits (50), Expect = 4.2 Identities = 3/14 (21%), Positives = 6/14 (42%) Query: 46 ERIQSHFIHAGLLF 59 + + H +H L Sbjct: 101 QYLHDHIVHFYHLH 114 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.328 0.145 0.407 Gapped Lambda K H 0.267 0.0474 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 303,780 Number of extensions: 12224 Number of successful extensions: 34 Number of sequences better than 10.0: 1 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 8 Length of query: 87 Length of database: 2,407,596 Length adjustment: 52 Effective length of query: 35 Effective length of database: 1,693,636 Effective search space: 59277260 Effective search space used: 59277260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 47 (22.5 bits)