BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781028|ref|YP_003065441.1| putative Mg2+ chelatase family
protein [Candidatus Liberibacter asiaticus str. psy62]
(87 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781028|ref|YP_003065441.1| putative Mg2+ chelatase family protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 87
Score = 172 bits (436), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MISRISTIAFQGIKGIPVEVQVMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFL 60
MISRISTIAFQGIKGIPVEVQVMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFL
Sbjct: 1 MISRISTIAFQGIKGIPVEVQVMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFL 60
Query: 61 VNELPSIYLQLIYQKKDLIMIYLSFLH 87
VNELPSIYLQLIYQKKDLIMIYLSFLH
Sbjct: 61 VNELPSIYLQLIYQKKDLIMIYLSFLH 87
>gi|254780232|ref|YP_003064645.1| inorganic pyrophosphatase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 177
Score = 23.5 bits (49), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 17 PVEVQVMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLVNELPSIYLQLI 72
P+ V M G + +I+ +P K + + IQS+ ++P+ YLQ +
Sbjct: 91 PIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQSY----------EDVPNAYLQKV 136
>gi|254780523|ref|YP_003064936.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter
asiaticus str. psy62]
Length = 357
Score = 21.9 bits (45), Expect = 2.1, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 5 ISTIAFQGIKGIPVEVQVM-VSPGRVGVQIVGLPDK-----AVIESRERIQSHFIHAGLL 58
+ST+ QG+ GI + V+ +S + + V L +K I ++ H HA L
Sbjct: 274 LSTVQ-QGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLS 332
Query: 59 FLVNELPSIYLQLIYQKKDLIMIYL 83
L+N++ Y+ +K I+ YL
Sbjct: 333 TLINKIEMSYMITTKLQKLSILNYL 357
>gi|254781170|ref|YP_003065583.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 483
Score = 21.2 bits (43), Expect = 3.4, Method: Composition-based stats.
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 49 QSHFIHAGLL 58
QSHFI+A LL
Sbjct: 57 QSHFIYASLL 66
>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
asiaticus str. psy62]
Length = 565
Score = 20.8 bits (42), Expect = 4.3, Method: Composition-based stats.
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 58 LFLVNELPSIYLQLIYQKKDLIMIYL 83
F + LPS ++ ++Y L M+++
Sbjct: 17 FFCITILPSFFINILYLTNPLYMMHI 42
>gi|254780622|ref|YP_003065035.1| bifunctional phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 405
Score = 20.0 bits (40), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 2 ISRISTIAFQGIKGIPVEVQVMVS 25
+ R + + +K +PV++ VMVS
Sbjct: 255 VERAEDMLQEVLKALPVDIAVMVS 278
>gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 622
Score = 19.6 bits (39), Expect = 9.4, Method: Composition-based stats.
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 32 QIVGLPDKAVIESRERIQSHFI 53
Q+V PD A E + ++S ++
Sbjct: 49 QVVANPDSACFEIAKSVRSEWV 70
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.328 0.145 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,652
Number of Sequences: 1233
Number of extensions: 1820
Number of successful extensions: 10
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 87
length of database: 328,796
effective HSP length: 56
effective length of query: 31
effective length of database: 259,748
effective search space: 8052188
effective search space used: 8052188
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.3 bits)
S2: 31 (16.5 bits)