HHsearch results for GI: 254781029 and protein with PDBid: 1nfn_A
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=96.68 E-value=0.031 Score=31.92 Aligned_cols=163 Identities=11% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999--9999999999999999999999999999999999999999999999999999
Q gi|254781029|r 342 TKDFDNRIESLSNTLNNSGRSLANQV--GNYTLMLGNNTDKVSIALKEQSQQFMQAFTSHICEMSNFFSEKQKSITVTLN 419 (1828)
Q Consensus 342 ~~~~~~~~e~l~~~L~~~~~~l~~~~--~~~~~~l~~~~e~l~~~l~e~~~~l~e~l~~~~~e~~~~l~~~~~~l~~~l~ 419 (1828)
.....++.......+.........++ ......++..+......+......+.+.|.....++...+......+...+.
T Consensus 26 ~e~~~~~f~dyv~~~~~~a~~~~~~l~~se~~~el~~~l~e~~~el~~~~~~l~~~L~p~~~e~~~~l~~~~e~l~~~l~ 105 (191)
T 1nfn_A 26 WELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLG 105 (191)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999997689999988878999999999998899999999999998687899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781029|r 420 DVLQSLRISLQEKEDSFCSNLKSTTDNTLREVDNRTNTLENRITAFLKEIVETFNNSITDFSSFYKDNLSEFESNLQGNI 499 (1828)
Q Consensus 420 ~~~~~l~~~l~e~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~el~~~l~~~~ 499 (1828)
.....+...+.....++...+....+.....+......+..++.....++...+.....++...+...+.++...+....
T Consensus 106 ~~~eelr~~l~~~~~el~~~~~~~~eelr~~l~~~~eel~~~l~~~~eel~~~L~~~~ee~~~k~~~~~eelr~~l~p~~ 185 (191)
T 1nfn_A 106 ADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERLGPLV 185 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999988779999999999899999988889999999999789999998899999999999989999999988779
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254781029|r 500 DKLQG 504 (1828)
Q Consensus 500 ~~l~~ 504 (1828)
..+..
T Consensus 186 e~~r~ 190 (191)
T 1nfn_A 186 EQGRV 190 (191)
T ss_dssp -----
T ss_pred HHHHC
T ss_conf 98734