Query gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str. psy62] Match_columns 1828 No_of_seqs 3096 out of 5397 Neff 11.9 Searched_HMMs 13730 Date Wed Jun 1 15:03:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781029.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1gs9a_ a.24.1.1 (A:) Apolipop 95.0 0.081 5.9E-06 26.4 9.7 136 399-540 4-139 (144) 2 d2q7ra1 f.56.1.1 (A:1-139) Ara 75.0 1.2 8.7E-05 16.5 4.9 26 99-125 79-104 (139) 3 d1ny9a_ a.181.1.1 (A:) Transcr 73.1 1.1 7.7E-05 16.9 2.6 44 1753-1796 42-85 (94) 4 d2uuia1 f.56.1.1 (A:2-147) Leu 62.9 2 0.00015 14.5 8.1 25 99-124 74-98 (146) 5 d1xmec1 f.23.9.1 (C:2-34) Bact 49.6 3.1 0.00023 12.9 3.2 25 139-164 6-32 (33) 6 d1ub2a2 a.93.1.3 (A:427-720) C 46.5 3.5 0.00025 12.5 2.3 13 1762-1774 256-268 (294) 7 d1o82a_ a.64.2.1 (A:) Bacterio 32.8 5.3 0.00039 10.9 2.0 24 101-124 23-46 (70) 8 d1kf6d_ f.21.2.2 (D:) Fumarate 32.4 5.4 0.00039 10.9 6.4 86 94-181 7-93 (119) 9 d2e74h1 f.23.27.1 (H:3-29) Pet 28.3 6.2 0.00045 10.4 3.6 16 149-164 8-23 (27) 10 d1q90r_ f.23.12.1 (R:) ISP sub 26.6 6.6 0.00048 10.1 2.5 27 130-157 11-37 (39) 11 d1y0pa3 d.168.1.1 (A:362-504) 25.7 6.8 0.0005 10.0 2.9 22 1763-1784 85-107 (143) 12 d2bs2c1 f.21.2.1 (C:1-254) Fum 24.5 7.4 0.00054 9.7 8.9 70 92-161 15-99 (254) 13 d1p0sl2 g.32.1.1 (L:3-49) Coag 24.3 7.5 0.00055 9.7 0.3 12 1736-1747 35-46 (47) 14 d1iwga7 f.35.1.1 (A:7-37,A:331 21.5 9.2 0.00067 8.9 2.7 21 150-170 73-93 (199) No 1 >d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]} Probab=94.95 E-value=0.081 Score=26.41 Aligned_cols=136 Identities=13% Similarity=0.170 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q gi|254781029|r 399 HICEMSNFFSEKQKSITVTLNDVLQSLRISLQEKEDSFCSNLKSTTDNTLREVDNRTNTLENRITAFLKEIVETFNNSIT 478 (1828) Q Consensus 399 ~~~e~~~~l~~~~~~l~~~l~~~~~~l~~~l~e~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~l~~~~~ 478 (1828) +..++.+.|......+....+.....+... .+...+.....+....+......+..++.....++...+..... T Consensus 4 ~~e~~~d~f~~y~~~l~~~a~~~~~~l~~s------el~~el~~~l~e~~~~l~~~~~~l~~~l~p~~~e~~~~l~~~~e 77 (144) T d1gs9a_ 4 RWELALGRFWDYLRWVQTLSEQVQEELLSS------QVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQ 77 (144) T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHSS------HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 089999899999999987489999999867------99999889999999999999999999878779999988886599 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999999999 Q gi|254781029|r 479 DFSSFYKDNLSEFESNLQGNIDKLQGCFADSHGNMEDLFLSNIQTIGSNLDKKTLLFEDILS 540 (1828) Q Consensus 479 ~~~~~~~~~~~el~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~l~ 540 (1828) .+...+...+.++..++......+...+......+...+....+.+...+......+...+. T Consensus 78 ~lr~~l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~eel~~~l~~~~eel~~kL~ 139 (144) T d1gs9a_ 78 AAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA 139 (144) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999987899999999988999999998999999998789999999999889999999860 No 2 >d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]} Probab=75.01 E-value=1.2 Score=16.46 Aligned_cols=26 Identities=12% Similarity=0.336 Sum_probs=20.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 279999999999999999999983173 Q gi|254781029|r 99 IALRNAFMSSLIWLACELGFLIKFYTN 125 (1828) Q Consensus 99 ~~~~~~~~~s~~w~~~~~~~~~~~~~~ 125 (1828) .|.| ++++.++|+.|=...++++.++ T Consensus 79 ~~~~-a~~~G~~~~vgR~~ha~Gy~~~ 104 (139) T d2q7ra1 79 SQVP-AAFAGLMYLFVRQKYFVGYLGE 104 (139) T ss_dssp CHHH-HHHHHHHHHHHHHHHHHHTCCS T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHHCC T ss_conf 7899-9999999999999999898678 No 3 >d1ny9a_ a.181.1.1 (A:) Transcriptional activator TipA-S {Streptomyces lividans [TaxId: 1916]} Probab=73.09 E-value=1.1 Score=16.92 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=34.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 77412525998999999850788789978999999999999998 Q gi|254781029|r 1753 KRLYTIKGQKVFLNLQEQYKADSALRNAIDRYISNFEEMLSEIA 1796 (1828) Q Consensus 1753 ~~~~~~~~~~~~~~i~~~y~~d~~f~~~v~ryi~~fe~~l~~~~ 1796 (1828) .+-++.-....|..+.+-|-.||.|+.+.|++-..+-..|++.. T Consensus 42 ~~~~~~~s~e~~~~Lg~mYv~D~rF~~~yd~~~~Gla~fl~~Ai 85 (94) T d1ny9a_ 42 ARNHYDCGYEMHTCLGEMYVSDERFTRNIDAAKPGLAAYMRDAI 85 (94) T ss_dssp HHHSSCCCHHHHHHHHHHTTSTHHHHHHHGGGSTTHHHHHHHHH T ss_pred HHHCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHH T ss_conf 87567999999999999970889999977422843999999999 No 4 >d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]} Probab=62.88 E-value=2 Score=14.54 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=19.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 27999999999999999999998317 Q gi|254781029|r 99 IALRNAFMSSLIWLACELGFLIKFYT 124 (1828) Q Consensus 99 ~~~~~~~~~s~~w~~~~~~~~~~~~~ 124 (1828) .|.| +.++.++|+.|=+..++++.. T Consensus 74 ~~~~-a~~lG~~~~vgRi~ha~gy~~ 98 (146) T d2uuia1 74 HEGA-AALCGLVYLFARLRYFQGYAR 98 (146) T ss_dssp CHHH-HHHHHHHHHHHHHHHHHHHHH T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHHC T ss_conf 8899-999999999999999986431 No 5 >d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]} Probab=49.58 E-value=3.1 Score=12.89 Aligned_cols=25 Identities=24% Similarity=0.656 Sum_probs=12.3 Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHH Q ss_conf 8899999999999999999--9999999 Q gi|254781029|r 139 EVITLFLVVSVVPILLFFS--FFIMISR 164 (1828) Q Consensus 139 ~~~~~~~~~~~~p~~~~~~--~a~~~~r 164 (1828) +.+|+++.. .+-|+.||+ +|..+.| T Consensus 6 gal~vi~il-~l~ilvfw~gv~avf~ar 32 (33) T d1xmec1 6 GALAVILVL-TLTILVFWLGVYAVFFAR 32 (33) T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHT T ss_pred CHHHHHHHH-HHHHHHHHHHHHHHHHCC T ss_conf 057999999-999999999999987506 No 6 >d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Probab=46.48 E-value=3.5 Score=12.53 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=4.9 Q ss_pred HHHHHHHHHHHCC Q ss_conf 9899999985078 Q gi|254781029|r 1762 KVFLNLQEQYKAD 1774 (1828) Q Consensus 1762 ~~~~~i~~~y~~d 1774 (1828) -.|+.|..+|-.| T Consensus 256 p~fr~~~e~YA~D 268 (294) T d1ub2a2 256 SILRAYSELYAQD 268 (294) T ss_dssp HHHHHHHHHHTST T ss_pred HHHHHHHHHHHCC T ss_conf 8899999998243 No 7 >d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]} Probab=32.81 E-value=5.3 Score=10.93 Aligned_cols=24 Identities=8% Similarity=-0.108 Sum_probs=16.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999999999999998317 Q gi|254781029|r 101 LRNAFMSSLIWLACELGFLIKFYT 124 (1828) Q Consensus 101 ~~~~~~~s~~w~~~~~~~~~~~~~ 124 (1828) -|+++|+|++-+.|..|++.+... T Consensus 23 g~vttivsil~avgsgglsllaaa 46 (70) T d1o82a_ 23 GWVTTIVSILTAVGSGGLSLLAAA 46 (70) T ss_dssp CCHHHHHHHHHHHCHHHHHHHHHT T ss_pred CCHHHHHHHHHHHCCCCHHHHHHH T ss_conf 503359999999736628999980 No 8 >d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]} Probab=32.44 E-value=5.4 Score=10.89 Aligned_cols=86 Identities=16% Similarity=0.216 Sum_probs=39.5 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 18732279999999999999999999983173-24555775640648899999999999999999999999999999999 Q gi|254781029|r 94 KNSLNIALRNAFMSSLIWLACELGFLIKFYTN-SPMDSFYDFAMRPEVITLFLVVSVVPILLFFSFFIMISRARDMHDAS 172 (1828) Q Consensus 94 ~~~~~~~~~~~~~~s~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~r~~~~~~~a 172 (1828) +||---+||.-+-+-+.|.+.-.-...++.+- -+++-++....+..-+..|+...++-++++...+.++|-| |+-+= T Consensus 7 KRS~EPi~WgLFgAGGm~~A~~~Pvlill~giLlPlG~~~~~a~~y~~i~aFa~s~iG~l~ll~~i~lplWh~--~HRih 84 (119) T d1kf6d_ 7 KRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCG--LHRMH 84 (119) T ss_dssp CCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHTTGGGTCSSTTTTSHHHHHHHHTSHHHHHHHHHHHHHHHHHH--HHHHH T ss_pred CCCCCCCHHEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH T ss_conf 8778983112344772058999889999999999612678665689999999844799999999999999999--99999 Q ss_pred HHHHHHHHH Q ss_conf 999999997 Q gi|254781029|r 173 QSIAGIALR 181 (1828) Q Consensus 173 ~~m~~~a~r 181 (1828) ..|-+.-++ T Consensus 85 HglHDlkih 93 (119) T d1kf6d_ 85 HAMHDLKIH 93 (119) T ss_dssp HHHHHTTCC T ss_pred HHHHHHCCC T ss_conf 988663000 No 9 >d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]} Probab=28.35 E-value=6.2 Score=10.37 Aligned_cols=16 Identities=6% Similarity=0.245 Sum_probs=13.1 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999999 Q gi|254781029|r 149 VVPILLFFSFFIMISR 164 (1828) Q Consensus 149 ~~p~~~~~~~a~~~~r 164 (1828) .+-|+|-|..||.+|- T Consensus 8 ~llvvftwsiamvvwg 23 (27) T d2e74h1 8 ALLVVFTWSIAMVVWG 23 (27) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHEEEEEEEC T ss_conf 8888763223468871 No 10 >d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]} Probab=26.60 E-value=6.6 Score=10.13 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=13.8 Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHH Q ss_conf 5775640648899999999999999999 Q gi|254781029|r 130 SFYDFAMRPEVITLFLVVSVVPILLFFS 157 (1828) Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 157 (1828) .+-.+... +.+++-+++.++|++.||+ T Consensus 11 ~~MNLll~-G~~~~~~~g~l~py~~fFv 37 (39) T d1q90r_ 11 NIMNLILA-GGAGLPITTLALGYGAFFV 37 (39) T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHS T ss_pred HHHHHHHH-HCCCHHHHHHCCCEEEEEC T ss_conf 99999997-2110101111000168756 No 11 >d1y0pa3 d.168.1.1 (A:362-504) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Probab=25.73 E-value=6.8 Score=10.01 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=7.6 Q ss_pred HHHHHHHHHHCCH-HHHHHHHHH Q ss_conf 8999999850788-789978999 Q gi|254781029|r 1763 VFLNLQEQYKADS-ALRNAIDRY 1784 (1828) Q Consensus 1763 ~~~~i~~~y~~d~-~f~~~v~ry 1784 (1828) |.+|++.++.-|+ .|+.||++| T Consensus 85 tleeLA~~~gid~~~L~~Tv~~y 107 (143) T d1y0pa3 85 SLVKLGKMEGIDGKALTETVARY 107 (143) T ss_dssp SHHHHHHHHTSCHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHH T ss_conf 39999998598978989999999 No 12 >d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]} Probab=24.51 E-value=7.4 Score=9.71 Aligned_cols=70 Identities=9% Similarity=0.000 Sum_probs=38.7 Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHH--------HCHHHHHHHHHHHHHHHHHHH Q ss_conf 5418732279999999999999999999983-------1732455577564--------064889999999999999999 Q gi|254781029|r 92 IGKNSLNIALRNAFMSSLIWLACELGFLIKF-------YTNSPMDSFYDFA--------MRPEVITLFLVVSVVPILLFF 156 (1828) Q Consensus 92 l~~~~~~~~~~~~~~~s~~w~~~~~~~~~~~-------~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~p~~~~~ 156 (1828) -+++.|+.|.|+=.+-|+-=+..++++...+ +++........++ ..|.++-++..++++|+++-- T Consensus 15 ~~~~~s~~~~~l~~l~slTGlvL~lFl~~Hm~~n~~il~g~eafn~~a~~l~~~~~~~~~~p~l~~i~~~~l~~~ll~H~ 94 (254) T d2bs2c1 15 PERKKSRMPAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLWVTKKFELDFIFEGGKPIVVSFLAAFVFAVFIAHA 94 (254) T ss_dssp TTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCHHHHHHHHHHTTCTTTSSSCCTHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 76677787079999999999999999999999889998199999999999986133347860899999999999999999 Q ss_pred HHHHH Q ss_conf 99999 Q gi|254781029|r 157 SFFIM 161 (1828) Q Consensus 157 ~~a~~ 161 (1828) ++|+- T Consensus 95 ~~a~~ 99 (254) T d2bs2c1 95 FLAMR 99 (254) T ss_dssp HHHGG T ss_pred HHHHH T ss_conf 99999 No 13 >d1p0sl2 g.32.1.1 (L:3-49) Coagulation factor X {Human (Homo sapiens) [TaxId: 9606]} Probab=24.28 E-value=7.5 Score=9.65 Aligned_cols=12 Identities=25% Similarity=0.767 Sum_probs=4.5 Q ss_pred HHHHHHHHHHCC Q ss_conf 899999975074 Q gi|254781029|r 1736 FVQLWKSYTLGE 1747 (1828) Q Consensus 1736 ~~~~w~~y~~g~ 1747 (1828) ....|..|..|| T Consensus 35 T~~FW~~Y~dgd 46 (47) T d1p0sl2 35 TNEFWNKYKDGD 46 (47) T ss_dssp HHHHHTTCTTSC T ss_pred HHHHHHHHCCCC T ss_conf 999999814799 No 14 >d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Probab=21.54 E-value=9.2 Score=8.91 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=11.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999 Q gi|254781029|r 150 VPILLFFSFFIMISRARDMHD 170 (1828) Q Consensus 150 ~p~~~~~~~a~~~~r~~~~~~ 170 (1828) +|+.++|.++.|.+-+..+-. T Consensus 73 i~~~i~~~~~~m~~~g~~l~~ 93 (199) T d1iwga7 73 VPVVLLGTFAVLAAFGFSINT 93 (199) T ss_dssp HHHHHHHHHHHHHTTTCCSCH T ss_pred CCHHHHHHHHHHHCCCCCHHH T ss_conf 100267778876237883477 Done!