Query         gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 1828
No_of_seqs    3096 out of 5397
Neff          11.9
Searched_HMMs 13730
Date          Wed Jun  1 15:03:32 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781029.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1gs9a_ a.24.1.1 (A:) Apolipop  95.0   0.081 5.9E-06   26.4   9.7  136  399-540     4-139 (144)
  2 d2q7ra1 f.56.1.1 (A:1-139) Ara  75.0     1.2 8.7E-05   16.5   4.9   26   99-125    79-104 (139)
  3 d1ny9a_ a.181.1.1 (A:) Transcr  73.1     1.1 7.7E-05   16.9   2.6   44 1753-1796   42-85  (94)
  4 d2uuia1 f.56.1.1 (A:2-147) Leu  62.9       2 0.00015   14.5   8.1   25   99-124    74-98  (146)
  5 d1xmec1 f.23.9.1 (C:2-34) Bact  49.6     3.1 0.00023   12.9   3.2   25  139-164     6-32  (33)
  6 d1ub2a2 a.93.1.3 (A:427-720) C  46.5     3.5 0.00025   12.5   2.3   13 1762-1774  256-268 (294)
  7 d1o82a_ a.64.2.1 (A:) Bacterio  32.8     5.3 0.00039   10.9   2.0   24  101-124    23-46  (70)
  8 d1kf6d_ f.21.2.2 (D:) Fumarate  32.4     5.4 0.00039   10.9   6.4   86   94-181     7-93  (119)
  9 d2e74h1 f.23.27.1 (H:3-29) Pet  28.3     6.2 0.00045   10.4   3.6   16  149-164     8-23  (27)
 10 d1q90r_ f.23.12.1 (R:) ISP sub  26.6     6.6 0.00048   10.1   2.5   27  130-157    11-37  (39)
 11 d1y0pa3 d.168.1.1 (A:362-504)   25.7     6.8  0.0005   10.0   2.9   22 1763-1784   85-107 (143)
 12 d2bs2c1 f.21.2.1 (C:1-254) Fum  24.5     7.4 0.00054    9.7   8.9   70   92-161    15-99  (254)
 13 d1p0sl2 g.32.1.1 (L:3-49) Coag  24.3     7.5 0.00055    9.7   0.3   12 1736-1747   35-46  (47)
 14 d1iwga7 f.35.1.1 (A:7-37,A:331  21.5     9.2 0.00067    8.9   2.7   21  150-170    73-93  (199)

No 1  
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=94.95  E-value=0.081  Score=26.41  Aligned_cols=136  Identities=13%  Similarity=0.170  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781029|r  399 HICEMSNFFSEKQKSITVTLNDVLQSLRISLQEKEDSFCSNLKSTTDNTLREVDNRTNTLENRITAFLKEIVETFNNSIT  478 (1828)
Q Consensus       399 ~~~e~~~~l~~~~~~l~~~l~~~~~~l~~~l~e~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~l~~~~~  478 (1828)
                      +..++.+.|......+....+.....+...      .+...+.....+....+......+..++.....++...+.....
T Consensus         4 ~~e~~~d~f~~y~~~l~~~a~~~~~~l~~s------el~~el~~~l~e~~~~l~~~~~~l~~~l~p~~~e~~~~l~~~~e   77 (144)
T d1gs9a_           4 RWELALGRFWDYLRWVQTLSEQVQEELLSS------QVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQ   77 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHHHHHHHHSS------HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             089999899999999987489999999867------99999889999999999999999999878779999988886599


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999
Q gi|254781029|r  479 DFSSFYKDNLSEFESNLQGNIDKLQGCFADSHGNMEDLFLSNIQTIGSNLDKKTLLFEDILS  540 (1828)
Q Consensus       479 ~~~~~~~~~~~el~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~l~  540 (1828)
                      .+...+...+.++..++......+...+......+...+....+.+...+......+...+.
T Consensus        78 ~lr~~l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~eel~~~l~~~~eel~~kL~  139 (144)
T d1gs9a_          78 AAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA  139 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999987899999999988999999998999999998789999999999889999999860


No 2  
>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.01  E-value=1.2  Score=16.46  Aligned_cols=26  Identities=12%  Similarity=0.336  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             279999999999999999999983173
Q gi|254781029|r   99 IALRNAFMSSLIWLACELGFLIKFYTN  125 (1828)
Q Consensus        99 ~~~~~~~~~s~~w~~~~~~~~~~~~~~  125 (1828)
                      .|.| ++++.++|+.|=...++++.++
T Consensus        79 ~~~~-a~~~G~~~~vgR~~ha~Gy~~~  104 (139)
T d2q7ra1          79 SQVP-AAFAGLMYLFVRQKYFVGYLGE  104 (139)
T ss_dssp             CHHH-HHHHHHHHHHHHHHHHHHTCCS
T ss_pred             CHHH-HHHHHHHHHHHHHHHHHHHHCC
T ss_conf             7899-9999999999999999898678


No 3  
>d1ny9a_ a.181.1.1 (A:) Transcriptional activator TipA-S {Streptomyces lividans [TaxId: 1916]}
Probab=73.09  E-value=1.1  Score=16.92  Aligned_cols=44  Identities=18%  Similarity=0.184  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             77412525998999999850788789978999999999999998
Q gi|254781029|r 1753 KRLYTIKGQKVFLNLQEQYKADSALRNAIDRYISNFEEMLSEIA 1796 (1828)
Q Consensus      1753 ~~~~~~~~~~~~~~i~~~y~~d~~f~~~v~ryi~~fe~~l~~~~ 1796 (1828)
                      .+-++.-....|..+.+-|-.||.|+.+.|++-..+-..|++..
T Consensus        42 ~~~~~~~s~e~~~~Lg~mYv~D~rF~~~yd~~~~Gla~fl~~Ai   85 (94)
T d1ny9a_          42 ARNHYDCGYEMHTCLGEMYVSDERFTRNIDAAKPGLAAYMRDAI   85 (94)
T ss_dssp             HHHSSCCCHHHHHHHHHHTTSTHHHHHHHGGGSTTHHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             87567999999999999970889999977422843999999999


No 4  
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.88  E-value=2  Score=14.54  Aligned_cols=25  Identities=16%  Similarity=0.266  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             27999999999999999999998317
Q gi|254781029|r   99 IALRNAFMSSLIWLACELGFLIKFYT  124 (1828)
Q Consensus        99 ~~~~~~~~~s~~w~~~~~~~~~~~~~  124 (1828)
                      .|.| +.++.++|+.|=+..++++..
T Consensus        74 ~~~~-a~~lG~~~~vgRi~ha~gy~~   98 (146)
T d2uuia1          74 HEGA-AALCGLVYLFARLRYFQGYAR   98 (146)
T ss_dssp             CHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHH-HHHHHHHHHHHHHHHHHHHHC
T ss_conf             8899-999999999999999986431


No 5  
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=49.58  E-value=3.1  Score=12.89  Aligned_cols=25  Identities=24%  Similarity=0.656  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHHH
Q ss_conf             8899999999999999999--9999999
Q gi|254781029|r  139 EVITLFLVVSVVPILLFFS--FFIMISR  164 (1828)
Q Consensus       139 ~~~~~~~~~~~~p~~~~~~--~a~~~~r  164 (1828)
                      +.+|+++.. .+-|+.||+  +|..+.|
T Consensus         6 gal~vi~il-~l~ilvfw~gv~avf~ar   32 (33)
T d1xmec1           6 GALAVILVL-TLTILVFWLGVYAVFFAR   32 (33)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHH-HHHHHHHHHHHHHHHHCC
T ss_conf             057999999-999999999999987506


No 6  
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]}
Probab=46.48  E-value=3.5  Score=12.53  Aligned_cols=13  Identities=23%  Similarity=0.432  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             9899999985078
Q gi|254781029|r 1762 KVFLNLQEQYKAD 1774 (1828)
Q Consensus      1762 ~~~~~i~~~y~~d 1774 (1828)
                      -.|+.|..+|-.|
T Consensus       256 p~fr~~~e~YA~D  268 (294)
T d1ub2a2         256 SILRAYSELYAQD  268 (294)
T ss_dssp             HHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHCC
T ss_conf             8899999998243


No 7  
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=32.81  E-value=5.3  Score=10.93  Aligned_cols=24  Identities=8%  Similarity=-0.108  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999999998317
Q gi|254781029|r  101 LRNAFMSSLIWLACELGFLIKFYT  124 (1828)
Q Consensus       101 ~~~~~~~s~~w~~~~~~~~~~~~~  124 (1828)
                      -|+++|+|++-+.|..|++.+...
T Consensus        23 g~vttivsil~avgsgglsllaaa   46 (70)
T d1o82a_          23 GWVTTIVSILTAVGSGGLSLLAAA   46 (70)
T ss_dssp             CCHHHHHHHHHHHCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             503359999999736628999980


No 8  
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=32.44  E-value=5.4  Score=10.89  Aligned_cols=86  Identities=16%  Similarity=0.216  Sum_probs=39.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             18732279999999999999999999983173-24555775640648899999999999999999999999999999999
Q gi|254781029|r   94 KNSLNIALRNAFMSSLIWLACELGFLIKFYTN-SPMDSFYDFAMRPEVITLFLVVSVVPILLFFSFFIMISRARDMHDAS  172 (1828)
Q Consensus        94 ~~~~~~~~~~~~~~s~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~r~~~~~~~a  172 (1828)
                      +||---+||.-+-+-+.|.+.-.-...++.+- -+++-++....+..-+..|+...++-++++...+.++|-|  |+-+=
T Consensus         7 KRS~EPi~WgLFgAGGm~~A~~~Pvlill~giLlPlG~~~~~a~~y~~i~aFa~s~iG~l~ll~~i~lplWh~--~HRih   84 (119)
T d1kf6d_           7 KRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCG--LHRMH   84 (119)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHTTGGGTCSSTTTTSHHHHHHHHTSHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred             CCCCCCCHHEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_conf             8778983112344772058999889999999999612678665689999999844799999999999999999--99999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999997
Q gi|254781029|r  173 QSIAGIALR  181 (1828)
Q Consensus       173 ~~m~~~a~r  181 (1828)
                      ..|-+.-++
T Consensus        85 HglHDlkih   93 (119)
T d1kf6d_          85 HAMHDLKIH   93 (119)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHHCCC
T ss_conf             988663000


No 9  
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=28.35  E-value=6.2  Score=10.37  Aligned_cols=16  Identities=6%  Similarity=0.245  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999
Q gi|254781029|r  149 VVPILLFFSFFIMISR  164 (1828)
Q Consensus       149 ~~p~~~~~~~a~~~~r  164 (1828)
                      .+-|+|-|..||.+|-
T Consensus         8 ~llvvftwsiamvvwg   23 (27)
T d2e74h1           8 ALLVVFTWSIAMVVWG   23 (27)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHEEEEEEEC
T ss_conf             8888763223468871


No 10 
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=26.60  E-value=6.6  Score=10.13  Aligned_cols=27  Identities=11%  Similarity=0.116  Sum_probs=13.8

Q ss_pred             HHHHHHHCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5775640648899999999999999999
Q gi|254781029|r  130 SFYDFAMRPEVITLFLVVSVVPILLFFS  157 (1828)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~  157 (1828)
                      .+-.+... +.+++-+++.++|++.||+
T Consensus        11 ~~MNLll~-G~~~~~~~g~l~py~~fFv   37 (39)
T d1q90r_          11 NIMNLILA-GGAGLPITTLALGYGAFFV   37 (39)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHH-HCCCHHHHHHCCCEEEEEC
T ss_conf             99999997-2110101111000168756


No 11 
>d1y0pa3 d.168.1.1 (A:362-504) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}
Probab=25.73  E-value=6.8  Score=10.01  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHCCH-HHHHHHHHH
Q ss_conf             8999999850788-789978999
Q gi|254781029|r 1763 VFLNLQEQYKADS-ALRNAIDRY 1784 (1828)
Q Consensus      1763 ~~~~i~~~y~~d~-~f~~~v~ry 1784 (1828)
                      |.+|++.++.-|+ .|+.||++|
T Consensus        85 tleeLA~~~gid~~~L~~Tv~~y  107 (143)
T d1y0pa3          85 SLVKLGKMEGIDGKALTETVARY  107 (143)
T ss_dssp             SHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             39999998598978989999999


No 12 
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=24.51  E-value=7.4  Score=9.71  Aligned_cols=70  Identities=9%  Similarity=0.000  Sum_probs=38.7

Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHH--------HCHHHHHHHHHHHHHHHHHHH
Q ss_conf             5418732279999999999999999999983-------1732455577564--------064889999999999999999
Q gi|254781029|r   92 IGKNSLNIALRNAFMSSLIWLACELGFLIKF-------YTNSPMDSFYDFA--------MRPEVITLFLVVSVVPILLFF  156 (1828)
Q Consensus        92 l~~~~~~~~~~~~~~~s~~w~~~~~~~~~~~-------~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~p~~~~~  156 (1828)
                      -+++.|+.|.|+=.+-|+-=+..++++...+       +++........++        ..|.++-++..++++|+++--
T Consensus        15 ~~~~~s~~~~~l~~l~slTGlvL~lFl~~Hm~~n~~il~g~eafn~~a~~l~~~~~~~~~~p~l~~i~~~~l~~~ll~H~   94 (254)
T d2bs2c1          15 PERKKSRMPAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLWVTKKFELDFIFEGGKPIVVSFLAAFVFAVFIAHA   94 (254)
T ss_dssp             TTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCHHHHHHHHHHTTCTTTSSSCCTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             76677787079999999999999999999999889998199999999999986133347860899999999999999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254781029|r  157 SFFIM  161 (1828)
Q Consensus       157 ~~a~~  161 (1828)
                      ++|+-
T Consensus        95 ~~a~~   99 (254)
T d2bs2c1          95 FLAMR   99 (254)
T ss_dssp             HHHGG
T ss_pred             HHHHH
T ss_conf             99999


No 13 
>d1p0sl2 g.32.1.1 (L:3-49) Coagulation factor X {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.28  E-value=7.5  Score=9.65  Aligned_cols=12  Identities=25%  Similarity=0.767  Sum_probs=4.5

Q ss_pred             HHHHHHHHHHCC
Q ss_conf             899999975074
Q gi|254781029|r 1736 FVQLWKSYTLGE 1747 (1828)
Q Consensus      1736 ~~~~w~~y~~g~ 1747 (1828)
                      ....|..|..||
T Consensus        35 T~~FW~~Y~dgd   46 (47)
T d1p0sl2          35 TNEFWNKYKDGD   46 (47)
T ss_dssp             HHHHHTTCTTSC
T ss_pred             HHHHHHHHCCCC
T ss_conf             999999814799


No 14 
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=21.54  E-value=9.2  Score=8.91  Aligned_cols=21  Identities=19%  Similarity=0.436  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999
Q gi|254781029|r  150 VPILLFFSFFIMISRARDMHD  170 (1828)
Q Consensus       150 ~p~~~~~~~a~~~~r~~~~~~  170 (1828)
                      +|+.++|.++.|.+-+..+-.
T Consensus        73 i~~~i~~~~~~m~~~g~~l~~   93 (199)
T d1iwga7          73 VPVVLLGTFAVLAAFGFSINT   93 (199)
T ss_dssp             HHHHHHHHHHHHHTTTCCSCH
T ss_pred             CCHHHHHHHHHHHCCCCCHHH
T ss_conf             100267778876237883477


Done!