RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer
[Candidatus Liberibacter asiaticus str. psy62]
(1828 letters)
>gnl|CDD|35464 KOG0243, KOG0243, KOG0243, Kinesin-like protein [Cytoskeleton].
Length = 1041
Score = 45.0 bits (106), Expect = 2e-04
Identities = 75/478 (15%), Positives = 156/478 (32%), Gaps = 29/478 (6%)
Query: 518 LSNIQTIGSNLDKKTLLFEDILSKKQNNISQITSMNTE-RLENTLTNSINSLKDMLEEKR 576
N I L ++ + L K + + + + I S ++ EEK
Sbjct: 471 YMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKL 530
Query: 577 QRIDSDIGKKSEELCSSFNSSYQKVSNVISDREKLFSNSLARVQSHFEETIAGHPQSIVD 636
+ + + EE +S ++K+ + + QS E ++ +
Sbjct: 531 VDRATKLRRSLEESQDDLSSLFEKLDRKDRL-DDDNQEVIDDFQSQLSENLSTLHGLVAS 589
Query: 637 SISNSTNNLYDKIMVLAAALSESQKSLDNSLK--AHATDVVHKITNAENQLVNRFDESSK 694
S S + L + + + LS K+ + + D++ ++ + QL + S+
Sbjct: 590 SSSQQISQLTTMLAQMESFLSAKSKATEIMKTKISKDRDILSEVLESLQQLQEVLKKDSE 649
Query: 695 NIICSYNSSNNKLETIFQKHLHSFNDTFNNKSDHVSGILKNSTQHIDDLFSNNAKRMEEL 754
+ + NSS + L + +T ++ ++S L N Q I LF+N + L
Sbjct: 650 SCLEVINSSITSSINELESMLETIANTADDLLQNISSRLSNQ-QEILSLFANQELQELVL 708
Query: 755 LHSGSANIESELSAISKAMNKSIDDVETISTALKERCQELGSDLVNHSDKVLSSLKQAQE 814
+ + S + ++ + + + + + S + + KQ E
Sbjct: 709 SQDSAQELSELTSTFFQTLDNQAEKLTNLFSEANISLSQKLSSFQKKFESIAEDEKQLVE 768
Query: 815 ---LLCTTFAQRNDSFVNALADNQSKFENNLVNQSHLLLDKLSSDIQKLTDIAYSKAIDV 871
L ++ QRN N L D + + VN L + S +Q L+D + +
Sbjct: 769 DIKELLSSHDQRN----NELLDIALQTLRSAVNSRESNLTESVSVMQNLSDDLKTIWQTL 824
Query: 872 ANSLTEIQGNVGVTLENHSQAMLEKISASNTLVAKTFEEC-----------------MSN 914
V +E QAM + +EC + +
Sbjct: 825 GKQNENHHNEVLSAIEEKQQAMKSVLKELLENAESQVDECKEAIESLKSLESNHVATLDS 884
Query: 915 ILLSYDENRQTLDKKLSDHIDVLRQNLAGSENKIDGAIGSASQFIRDILDENSSRIES 972
++ E + L + ++ + N I + D+L E I
Sbjct: 885 LVRGVSEQNKKLQDEFLSLLNSKLNSFDVLTNSIVTPHSILLKLDDDVLPETLVIISP 942
>gnl|CDD|35383 KOG0161, KOG0161, KOG0161, Myosin class II heavy chain
[Cytoskeleton].
Length = 1930
Score = 39.8 bits (93), Expect = 0.007
Identities = 111/749 (14%), Positives = 263/749 (35%), Gaps = 86/749 (11%)
Query: 644 NLYDKIMVLAAALSESQKSLDNSLKAHATDVVHKITNAENQLVNRFDESSKN--IICSYN 701
++I L L +S+ L+ ++ + + + QL + ++ ++
Sbjct: 842 AKEEEIQKLKEELQKSESKR-KELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLR 900
Query: 702 SSNNKLETIFQKHLHSFNDTFNNKSDHVSGILKNSTQHIDDLFSN--NAKRMEELLHSGS 759
+ +LE ++ L + K+ + + Q + +L + + L
Sbjct: 901 AEKQELEKELKE-LKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEK 959
Query: 760 ANIESELSAISKAMNKSIDDVETIST---ALKERCQELGSDL------VNHSDKVLSSLK 810
E++L + + +N +++ +S L+ER +EL DL +K + L+
Sbjct: 960 NAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLE 1019
Query: 811 QAQELLCTTFAQRN----------DSFVNALADNQSKFENNLVNQSHL--LLDKLSSDIQ 858
Q + L T + L D Q E + L L K S++
Sbjct: 1020 QQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELS 1079
Query: 859 KLTDIAYSKAIDVANSLTEIQGNVGVTLENHSQAMLEKISASNTLVAKT----------F 908
+L + +VA +I+ LE + + E++ A AK
Sbjct: 1080 QLQSKLEDEQAEVAQLQKQIK-----ELEARIKELEEELEAERASRAKAERQRRDLSEEL 1134
Query: 909 EECMSNILLSYDENRQTLDKKLSDHIDV--LRQNLAGSENKIDGAIGSASQFIRDILDEN 966
EE + L+ +V LR++L + I + D L E
Sbjct: 1135 EELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAEL 1194
Query: 967 SSRIESLLSCSNNSVNSTLLRSHQKFDRLLQEKSDELIQLLDNKA--SCLSTAVSTQTIN 1024
++E L + L + R + + + EL QL K + Q
Sbjct: 1195 QEQLEQL-----QKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSE 1249
Query: 1025 LENNLKEQEKSLSRVVDTSASSFKYLSD------SIQTLAQELVSVIGSMSQSTTDISGK 1078
L+ L EQE+ + + + + + L ++ ++ +
Sbjct: 1250 LQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQ 1309
Query: 1079 LEI------SLDSVNQKIQKCREFFGDNIVAFMDEISKVMEISEKRISQRTQEISQQLLQ 1132
LE +L++ ++++ + + + +E + E+++S+ E++Q +
Sbjct: 1310 LEEETREKSALENALRQLEHELDLLREQL----EEEQEAKNELERKLSKANAELAQWKKK 1365
Query: 1133 NNDVITNQIIDSTSRVRGEIVDISNKFIETSRVLEQREEKFHSALDSFSDNISRILLDVD 1192
+ + E+ ++ K + + LE++ E ++ S +R+ +++
Sbjct: 1366 FE--------EEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELE 1417
Query: 1193 HTIS--SHTNESRSLIEQRIHEVKDVLSNLDRALESYGSTVFKQFKEYVQCFETNMENME 1250
+ + + +E++ + +L+ + LE + + + ++ T ++ ++
Sbjct: 1418 DLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAEL-DAAQRELRQLSTELQKLK 1476
Query: 1251 SLFDKNNDSMLLSFKERSNILDNILSQRSMEISDSIS--GAFHKEGNAVVNVIDQQIYNA 1308
+ ++ + + E + LSQ ++ + G E ++Q+
Sbjct: 1477 NALEELLEQL-----EELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEEL 1531
Query: 1309 ANALKKLEALLISDVEKITNRITDSSQDV 1337
AL++LEA L E R+ Q +
Sbjct: 1532 QAALEELEAAL-EAEEDKKLRLQLELQQL 1559
Score = 34.4 bits (79), Expect = 0.26
Identities = 87/535 (16%), Positives = 182/535 (34%), Gaps = 60/535 (11%)
Query: 183 IDPEEYSSEKMQSISSAVRKEIVLMTEEIDRAISRASELEKTVRSEIEVLENNYTKSEMR 242
+D E + E+ + I + K +++ + E + ++ + E L+N K E
Sbjct: 1022 LDDLEVTLEREKRIRMELEKAK----RKLEGELKDLQESIEELKKQKEELDNQLKKKESE 1077
Query: 243 IDNITQNLKQEREAIINHGTQ---LCTSIAEVHESLKEELSLTS--EEISVHLSRAIDSF 297
+ + L+ E+ + Q L I E+ E L+ E + + E LS ++
Sbjct: 1078 LSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEEL 1137
Query: 298 QSIVDVRIAKVTEKTTRIVQESAQTISSKIDQLLEVLHSTSIVITKDFDNRIESLSNTLN 357
+ ++ TT E ++ K + ++ L T D + +IE L
Sbjct: 1138 KEELEE-----QGGTTAAQLE----LNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHA 1188
Query: 358 NSGRSLANQVGNYTLMLGNNTDKVSIALKEQSQQFMQAFTSHICEMSNFFSEKQKSI--T 415
+S L Q+ K L+++ + E+ SEK+
Sbjct: 1189 DSLAELQEQLEQLQ--------KDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKD 1240
Query: 416 VTLNDVLQSLRISLQEKEDSFCSNLKSTTDNTLREVDNRTNTLENR--ITAFLKEIVETF 473
L L L++ L E+E ++L + E + + LE + L +
Sbjct: 1241 KKLEAQLSELQLKLDEQERLR-NDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQAL 1299
Query: 474 NNSITDFSSFY------KDNLSEFESNLQGNIDKLQGCFADSHGNMEDLFLSNIQTIGSN 527
+ + + K L L+ +D L+ + +L +
Sbjct: 1300 ESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAEL 1359
Query: 528 LDKKTLLFEDILSKKQNNISQITSMNTERLENTLTNSINSLKDMLEEKRQRIDS------ 581
K E++L + + E L+ L + L++ +E + S
Sbjct: 1360 AQWKKKFEEEVLQRLEEL---------EELKKKLQQRLQELEEQIEAANAKNASLEKAKN 1410
Query: 582 DIGKKSEELCSSFNSSYQKVSNVISDREKLFSNSLARVQSHFEETIAGHPQSIVDSISNS 641
+ ++ E+L S V+ + ++K F LA + E+ A + +
Sbjct: 1411 RLQQELEDLQLDLERSRAAVAA-LEKKQKRFEKLLAEWKKKLEKLQAELDAAQREL---- 1465
Query: 642 TNNLYDKIMVLAAALSESQKSLD--NSLKAHATDVVHKITNAENQLVNRFDESSK 694
L ++ L AL E + L+ + + + + +++ R E K
Sbjct: 1466 -RQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEK 1519
>gnl|CDD|112953 pfam04163, Tht1, Tht1-like nuclear fusion protein.
Length = 554
Score = 35.1 bits (80), Expect = 0.21
Identities = 40/225 (17%), Positives = 83/225 (36%), Gaps = 15/225 (6%)
Query: 695 NIICSYNSSNNKLETIFQKHLHSF---NDTFNNKSDHVSGILKNSTQHIDDLFSNNAKRM 751
NI + + L+ HL +F D N D +G +NS + N +
Sbjct: 168 NITELQDQFGDDLDMKIL-HLMNFEMEQDKMNQFIDDFAGKFRNSDIELRFADENFRIIL 226
Query: 752 EELLHSGSANIESELSAISKAMNKSIDDVETISTALKERCQELGSDLVNHSDKVLSSLKQ 811
E + S N + E + ++I+ L+ ++ S N ++
Sbjct: 227 EIMDLSEFQNHQQEGKVNQDEILETIEQ-------LESEIFDINSFFANFIEESAGVHNH 279
Query: 812 AQELLCTTFAQRNDSFVNALADNQSKFENNLVNQSHLLLDKLSSDIQKLTDIAYSKAIDV 871
E L FA N ++A+ D + F L ++ L++ +++ + + ID
Sbjct: 280 IIEDLADEFASENAIALSAIGDLKDDFLAFLEDRIKNLIEMSEDSLKE----SVQRNIDF 335
Query: 872 ANSLTEIQGNVGVTLENHSQAMLEKISASNTLVAKTFEECMSNIL 916
NS + + + L+ + + +S L A+ + ++ L
Sbjct: 336 VNSGFQELEDFSIGLKEELGGLKKDLSEQQNLEAEEILQGFNDFL 380
>gnl|CDD|39842 KOG4643, KOG4643, KOG4643, Uncharacterized coiled-coil protein
[Function unknown].
Length = 1195
Score = 34.7 bits (79), Expect = 0.23
Identities = 54/360 (15%), Positives = 115/360 (31%), Gaps = 32/360 (8%)
Query: 703 SNNKLETIFQKHLHSFNDTFNNKSDHVSGILKNSTQHIDDLFSNNAKRMEELLHSGSANI 762
S Q + D + D + + I K + + L++ +
Sbjct: 453 STVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQI--------KNLNKSLNNRDLEL 504
Query: 763 ESELSAISKAMNKSIDDVETISTALKERCQELGSDLVNHSDKVLSSLKQAQELLCTTFAQ 822
+ ++ + + L + +EL L N ++ LKQ Q L T+
Sbjct: 505 SRLHALKNELKEQ-YKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNG 563
Query: 823 --------RNDSFVNALADNQSKFENNLVNQSHLLLDKLSSDIQKLTDIAYSKAIDVANS 874
+ N L ++ L + ++ + + +
Sbjct: 564 ALLEQNNNDLELIHNELKKYIDALNALRRHKEKLEEEIMNQQLFEDPIPLKRDIEWLRRK 623
Query: 875 LTEI---------QGNVGVTLENHSQAMLEKISASNTLVAKTFEECMSNILLSYDENRQT 925
+++ + + E L++ L KT + + + + E RQ
Sbjct: 624 ESKLLKEKKDRNREETKELMDEKLQVEDLQEKLRELPLEFKTKNDEILMVGSNILEERQR 683
Query: 926 LDKKLSD-HIDVLRQNLAGSENKIDGAIGSASQFIRDILDE---NSSRIESLLSCSNNSV 981
L S+ ID+L+ ++ S+ + + A ++D L E S + N
Sbjct: 684 LGGCKSNAEIDLLQVSIRNSQIQGELENTEAPTKLQDELQELELGSKKRSQNADELANMN 743
Query: 982 NSTLLRSHQKFDRLLQEKSDELIQ--LLDNKASCLSTAVSTQTINLENNLKEQEKSLSRV 1039
++ L+ Q+ + L DEL + + + A Q + N++E SLS
Sbjct: 744 STLLVSRLQQLNNKLTRDYDELKKQSMELRQKVARQNASRQQALESNRNIRENSASLSEE 803
>gnl|CDD|37618 KOG2407, KOG2407, KOG2407, GPI transamidase complex, GPI16/PIG-T
component, involved in glycosylphosphatidylinositol
anchor biosynthesis [Cell wall/membrane/envelope
biogenesis, Posttranslational modification, protein
turnover, chaperones].
Length = 575
Score = 34.2 bits (78), Expect = 0.34
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 961 DILDENSSRIESLLSCSNNSVNSTLLRSHQKFDRLLQEKSDELIQLLDNKASCLSTAVST 1020
+ EN + + LL C + S S+LL SH+ F+ + +S ++ + L +
Sbjct: 176 TVCTENLTPWKKLLPCKSKSGISSLLDSHKLFNTVYHSQSLDVRTVCSENEKDLCSVEME 235
Query: 1021 QTINL--ENNLKEQEK---SLSRVVDTSASSFKYLSDSIQT 1056
QTI++ + + Q K SL R+ S+ L++S +
Sbjct: 236 QTISVVMDVSQTGQRKPDWSLRRLFGRPLGSYCPLAESSKI 276
>gnl|CDD|36214 KOG0996, KOG0996, KOG0996, Structural maintenance of chromosome
protein 4 (chromosome condensation complex Condensin,
subunit C) [Chromatin structure and dynamics, Cell cycle
control, cell division, chromosome partitioning].
Length = 1293
Score = 34.2 bits (78), Expect = 0.38
Identities = 139/867 (16%), Positives = 299/867 (34%), Gaps = 105/867 (12%)
Query: 427 ISLQEKEDSFCSNLKSTTDNTLREVDNRTNTLENRITAFLKEIVETFNNSITDFSSFYKD 486
I + + +S +N ++ V+ LE L E ++ N + +
Sbjct: 269 IEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEAL-EFLKKENELFRKKNKLCQY 327
Query: 487 NLSEFESNLQGNIDKLQGCFADSHGNMEDLFLSNIQTIGSNLDKKTLLFEDILSKKQNNI 546
L E + + ++L+ ++D ++K + + K+
Sbjct: 328 ILYESRAKIAEMQEELEKI----EEGLKDENEKFDIESNEEVEK-----NEAVKKEIKER 378
Query: 547 SQITSMNTERLENTLTNSINSLKDMLEEKRQRIDSDIGKKSEELCSSFNSSYQKVSNVIS 606
++ E L+ + EEK +R+ S I K +E+ +K S
Sbjct: 379 AKELKNKFESLKKKF-QDLEREDVKREEKLKRLTSKIKKLEKEI--------EKARRKKS 429
Query: 607 DREKLFSNSLARVQSH---------FEETIAGHPQSIVDSISNSTNNLYDKIMVLAAALS 657
+ EK + +Q E I+DS+ T + ++I L L
Sbjct: 430 ELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELM 489
Query: 658 ESQKSLDNSLKAHATDV---VHKITNAENQLVNRFDESSKNIICSYNSSNNKLETIFQKH 714
K + N ++ + + + + + +E ++ S S + +T
Sbjct: 490 PLLKQV-NEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSES-LKEKKTELDDL 547
Query: 715 LHSFNDTFNNKSDHVSGILKNSTQHIDDLFSNNAKRMEELLHSGSANIESELSAISKAMN 774
+ L + +L S K + + E S++S + +
Sbjct: 548 KEELPSL-KQELKEKEKELPKLRKEERNLKSQLNKLRQRV--------EEAKSSLSSSRS 598
Query: 775 KSIDDVETISTALKERCQELGSDLVNHSDKVLSSLKQAQE----LLCTTFAQRNDSFVNA 830
++ L + S + L L E + T A+ + V+
Sbjct: 599 RN--------KVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDVAISTACARLDYIVVDT 650
Query: 831 LADNQSKF----ENNLVNQSHLLLDKLSSDIQKLTDIAYSKAIDVANSLTEIQGNVGVTL 886
+ Q +NNL + ++LDK+ +KL I + + L V
Sbjct: 651 IETAQECINFLKKNNLGRATFIILDKIKDHQKKLAPITTPENVPRLFDL------VKCKD 704
Query: 887 ENHSQAMLEKISASNTLVAKTFEECMSNILLSYDENRQ----TLDKKLSDHIDVLRQNLA 942
E A + +TLVA E+ ++Y ++R+ TLD L + +
Sbjct: 705 EKFRPAFYFAL--RDTLVADNLEQATR---IAYGKDRRWRVVTLDGSLIEKSGT----MT 755
Query: 943 GSENKIDGAIGSASQFIRDILDENSSRIESLLSCSNNSVNSTLLRSHQKFDRLLQEKSDE 1002
G K+ G S + + E+ ++E LS ++ + H+ +R+ + + E
Sbjct: 756 GGGKKVKGGRMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLR--E 813
Query: 1003 LIQLLDNKASCLSTAVS---TQTINLENNLKEQEKSLSRVVDTSASSFKYLSDSIQTLAQ 1059
I L+N+ L+ +V LE+ + E E ++ + V K L + I+ L +
Sbjct: 814 RIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVD-KKRLKELEEQIEELKK 872
Query: 1060 ELVSVIGSMSQSTTDISGKLEISLDSVNQKIQKCREFFGDNIVAFMDEISKVMEISEKRI 1119
E V + + I +L+ +D + + + ++ D++ K+ E +K
Sbjct: 873 E-VEELQEKAAKKARIK-ELQNKIDEIGGEKVQAQK----------DKVEKINEQLDKLE 920
Query: 1120 SQRTQEISQQLLQNNDVITNQIIDSTSRVRGEIVDISNK---FIETSRVLEQREEKFHSA 1176
+ + ++ +D + S + EI D + E + LE++ +
Sbjct: 921 ADIAKLTVA--IKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKE 978
Query: 1177 LDSFSDNISRILLDVDHTISSHTNESRSLIEQRIH--EVKDVLSNLDRALESYGSTVF-- 1232
+++ I ++ S N +S E + ++++ L ++ L S +
Sbjct: 979 YKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIENKLEAINGELNEIESKIKQP 1038
Query: 1233 -KQFKEYVQCFETNMENMESLFDKNND 1258
K+ K+ C T L ++ +
Sbjct: 1039 EKELKKLSLCNMTETRPQIELDVESPE 1065
>gnl|CDD|34877 COG5280, COG5280, Phage-related minor tail protein [Function
unknown].
Length = 634
Score = 33.9 bits (77), Expect = 0.43
Identities = 36/228 (15%), Positives = 79/228 (34%), Gaps = 44/228 (19%)
Query: 218 ASELEKTVRSEIEVLENNYTKSEMRIDNITQNLKQEREAIINHGTQLCT----SIAEVHE 273
E E+ EI V E T S ++ T ++++ + + + + T SIAEV E
Sbjct: 94 GEEAERLFTREIRVTEGGLTGSLSELNEPTVSVREHGKGLKDEELRFVTGGDSSIAEVFE 153
Query: 274 SLKEELSLTSEEISVHLSRAIDSFQSIVDVRIAKVTEKTTRIVQESAQTISSKIDQLLEV 333
S+K+ ++ I+ ++A ++
Sbjct: 154 SIKDRVT------------------------------AALGILMKAAGLKGGVATDVIAG 183
Query: 334 LHSTSIVITKDFDNRIESLSNTLNNSGRSLA---NQVGNYTLMLGNNTDKVSIALKEQSQ 390
+ D D+ ++ +G+ + + + ++ +KV ALKE +Q
Sbjct: 184 GFQAGSAFSGDVDDTLDEYGPQFGKNGKEAKKLFDTIIDGAQKGADSREKVGDALKEFNQ 243
Query: 391 QF-------MQAFTSHICEMSNFFSEKQKSITVTLNDVLQSLRISLQE 431
Q +++ T + S + + +++L +S E
Sbjct: 244 QLQDASGAALESLTESALKFSKIMAADGNEAKRAASAAMEALGLSADE 291
>gnl|CDD|35241 KOG0018, KOG0018, KOG0018, Structural maintenance of chromosome
protein 1 (sister chromatid cohesion complex Cohesin,
subunit SMC1) [Cell cycle control, cell division,
chromosome partitioning].
Length = 1141
Score = 33.7 bits (77), Expect = 0.43
Identities = 50/340 (14%), Positives = 112/340 (32%), Gaps = 52/340 (15%)
Query: 193 MQSISSAVRKEIVLMTEEIDRAISRASELEKTVRSEIEVLENNYTKSEMRIDNITQNLKQ 252
++ I+ KE+ + EEI +I E E+ ++ E+ E T + + +I K+
Sbjct: 134 VEKIAGKNPKELTALFEEISGSIELKPEYEE-LKYEMAKAEETTTGNYKKKKSIAAEKKE 192
Query: 253 EREAIINHGTQLCTSIAEVHESLKEELSLTSEEISVHLSRAIDSFQSIVDVRIAKVTEKT 312
+E AE ++ LK+E +E + V+ I K ++
Sbjct: 193 AKEGK---------EEAEKYQRLKDEKGKAQKEQFLWE-------LFHVEACIEKANDEL 236
Query: 313 TRIVQESAQTISS--KIDQLLEVLHSTSIVITKD---FDNRIESLSNTLNNSGRSLANQV 367
+R+ E + K ++ + V I ++ D +I L + +
Sbjct: 237 SRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKE 296
Query: 368 GNYTLM------LGNNTDKVSIALKEQSQQFMQAFTSHICEMSNFFSEKQKSITVTLNDV 421
N + + + + + + + ++ + + E +K I +
Sbjct: 297 -NASHLKKRLEEIEKDIETAKKDYRALKET-IERLEKELKAVEGAKEEFEKEIEERSQER 354
Query: 422 LQSLRISLQEKEDSFCSNLKSTTDN----------------TLREVDNRTNTLENRITAF 465
L + + E+ ++ + TL R LE RI
Sbjct: 355 GSELNLKDDQVEEYERLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQL 414
Query: 466 LKEIVE--TFNNSITDFSSFYKDNLSEFESNLQGNIDKLQ 503
+ + N + + + E L+ ++D L+
Sbjct: 415 KESVERLDKRRNKLAAKITSLSRSYEE----LKHDLDSLE 450
>gnl|CDD|36180 KOG0962, KOG0962, KOG0962, DNA repair protein RAD50, ABC-type
ATPase/SMC superfamily [Replication, recombination and
repair].
Length = 1294
Score = 33.7 bits (77), Expect = 0.46
Identities = 74/467 (15%), Positives = 160/467 (34%), Gaps = 44/467 (9%)
Query: 385 LKEQSQQFMQAFTSHICEMSNFFSEKQKSITVTLNDVLQSLRISLQEKEDSFCSNLKSTT 444
LK+ + Q + E+ + + K+++ + LN +I ++E S N
Sbjct: 190 LKKLRKDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPI 249
Query: 445 DNTLREVDNRTNTLENRITAF---------LKEIVETFNNSITDFSSFYKDNLSEFESNL 495
+ + E++ LE + LK+ + I + L E SN
Sbjct: 250 EAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNF 309
Query: 496 QGNIDKLQGCFADSHGNMEDL--FLSNIQTIGSNLDKKTLLFEDILSKKQNNISQITSMN 553
+ ++++ + + DL S++ + + LD + + Q Q S+
Sbjct: 310 EERLEEMGEKLRELEREISDLNEERSSLIQLKTELDLEQSELQAEAEFHQELKRQRDSLI 369
Query: 554 TERLENTLTNSINSLKDMLE---------EKRQRIDSDIGKKSEELCSSFNSSYQKVSNV 604
E +S+ SL+ M E +R D K+ ++ + ++ +
Sbjct: 370 QELAHQYQLDSVESLEFMAEVKKDFRNLILERFGGLEDDIKQRKKDIAELETNALDLIKE 429
Query: 605 ISDREKLFSNSLARVQSHFEETIAGHPQSIVD---SISNSTNNLYDKIMVLAAALSESQK 661
I+DRE SL + +E + + D +ST++L L A +
Sbjct: 430 ITDREV----SLEAQKRIKDEIKKLESKGLKDKSFQYEDSTDDLKKLDERLKEAERLLES 485
Query: 662 SLDNSLKAHATDVVHKITNAENQLVNRFDESSKNIICSYNSSNNKLETIFQKHLHSFNDT 721
+ N+ + + + + N QL + + + + + N E + L
Sbjct: 486 AEKNNDELALKEKIAEKQNEMAQLEIQKKKLDEEL----DGLNKDAEKRAKLELLKKKL- 540
Query: 722 FNNKSDHVSGILKNSTQHIDDLFS---NNAKRMEELLHSGSANIESELSAISKAMNKSID 778
K + I + N + +E+ LH S I+ M + +
Sbjct: 541 -RKKDAELRKIKSRLSDEKGRAIEFPLTNDRSLEKELHKLSKEIQE--------MEERLR 591
Query: 779 DVETISTALKERCQELGSDLVNHSDKVLSSLKQAQELLCTTFAQRND 825
++ +L+ + DL + ++ L S + + T + D
Sbjct: 592 MLQLEEQSLEINRNGIRKDLEDRKEEELKSKEFFLKDESGTIDEYLD 638
>gnl|CDD|30880 COG0534, NorM, Na+-driven multidrug efflux pump [Defense
mechanisms].
Length = 455
Score = 32.5 bits (74), Expect = 1.1
Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 74 FYPANDLDNGGITHILQNIGKNSLNIALRNAFMSSLIWLACELGFLIKFYTNSPMDSFYD 133
F P + + QN+G + A R A ++ + L L +
Sbjct: 290 FMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREP-IISL 348
Query: 134 FAMRPEVITLFLVVSVVPILLFFSFFIMI 162
F PEVI L V ++ I F F I
Sbjct: 349 FTTDPEVIA--LAVILLLIAALFQPFDGI 375
>gnl|CDD|37349 KOG2138, KOG2138, KOG2138, Predicted RNA binding protein, contains
G-patch domain [RNA processing and modification].
Length = 883
Score = 32.4 bits (73), Expect = 1.3
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 4 KKENKATYRDSLKEFEEQSTSDSHENKKRHHSRKKHKYSRRDDSIESKDRQQ 55
KK++K + + E+S KK +K K S +S +S D+Q
Sbjct: 808 KKKDKHKKKKEKRRKSEKSKKHKKHKKKGKQKNRKPKKSSSSESSDSSDKQS 859
>gnl|CDD|37873 KOG2662, KOG2662, KOG2662, Magnesium transporters: CorA family
[Inorganic ion transport and metabolism].
Length = 414
Score = 32.2 bits (73), Expect = 1.3
Identities = 41/227 (18%), Positives = 81/227 (35%), Gaps = 47/227 (20%)
Query: 372 LMLGNNTDKVSIALKEQSQQFMQAFTSHICEMSNFFSEKQKSITVTLNDVL----QSLRI 427
++L ++ D V +E ++ S Q S D L ++L +
Sbjct: 133 VLLLDSLDPVIPYNEELQRRLPVELESRG---------NQLSSDGGSKDELPFEFRALEV 183
Query: 428 SLQEKEDSFCSNLKSTTDNTLREVDNRTNTLENRITAFLKEIVETFNNSITDFSSFYKDN 487
+L+ + CS L D+R + LE L E+ + + K
Sbjct: 184 ALE----AACSFL-----------DSRLSELETEAYPLLDELTNKISTLNLERLRILKKR 228
Query: 488 LSEFESNLQGNIDKLQGCFADSHGNMEDLFLS-------------NIQTIGSNLDKKTLL 534
L+E S +Q D+L+ D +M +++L+ TI + + +
Sbjct: 229 LTELTSRVQKVRDELEE-LLDDDDDMAEMYLTRKLAQASSPESAPTSPTIKAGISRAKSN 287
Query: 535 FEDILSKKQNNISQITSMNTERLENTLTNSINSLKDMLEEKRQRIDS 581
+ ++++ ++ E L I+S + LE R+ ID
Sbjct: 288 RASSTVRGEDDVEEL-----EMLLEAYFMQIDSTLNKLESLREYIDD 329
>gnl|CDD|30998 COG0653, SecA, Preprotein translocase subunit SecA (ATPase, RNA
helicase) [Intracellular trafficking and secretion].
Length = 822
Score = 32.1 bits (73), Expect = 1.6
Identities = 32/173 (18%), Positives = 68/173 (39%), Gaps = 32/173 (18%)
Query: 1094 REFFGDNIVAFMDE-------------ISKVMEISEKRISQRTQEISQQLLQNNDVITNQ 1140
R F D + A MD+ +++ +E +++++ R +I +QLL+ +DV+ +Q
Sbjct: 550 RRFASDRLPALMDKLGLKEGEAIESKMVTRAVERAQRKVEGRNFDIRKQLLEYDDVLNDQ 609
Query: 1141 I-------------IDSTSRVRGEIVDISNKFIETSRVLEQREEKFHSALDSFSDNISRI 1187
+D + + I D+ + Q+ E + L+ D +
Sbjct: 610 RKVIYAQRNRLLEALDLSEFISKMIEDVIKALVGEYIPPPQQAELWD--LEGLIDELKGT 667
Query: 1188 L-LDVDHTISSHTNESRSLIEQRIHEVKDVLSNLDRALESYGSTVFKQFKEYV 1239
+ D+ S +E+ + +RI + E G ++F+ YV
Sbjct: 668 VHPDLPINKSDLEDEAEEELAERILK---AADEAYDKKEEVGPEAMREFERYV 717
>gnl|CDD|177172 MTH00110, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 459
Score = 31.4 bits (72), Expect = 2.3
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 10/44 (22%)
Query: 86 THILQNIGKNSLNI--------ALRNAFMSSLIWLACELGFLIK 121
+I N+G SLN L N++ ++L+WLAC + F++K
Sbjct: 165 LYIQNNLG--SLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVK 206
>gnl|CDD|34878 COG5281, COG5281, Phage-related minor tail protein [Function
unknown].
Length = 833
Score = 30.9 bits (69), Expect = 3.0
Identities = 47/296 (15%), Positives = 92/296 (31%), Gaps = 18/296 (6%)
Query: 1021 QTINLENNLKEQEKSLSRVVDTSASSFKYLSDSIQTLAQELVSVIGSMSQSTTDISGKLE 1080
+T E K K+ D +A Y D +Q AQ + +
Sbjct: 436 RTARQEELNKALAKAKILQADKAAK--AYQEDILQREAQSRGKTAAAERSQEQMTAALK- 492
Query: 1081 ISLDSVNQKIQKCREFFGDNIVAFMDEISKVMEISEKRISQRTQEISQQLLQNNDVITNQ 1140
+L + Q+I G A + ++ +E++ + +E Q+ LQ +
Sbjct: 493 -ALLAFQQQIADLS---GAKEKA--SDQKSLLWKAEEQYALLKEEAKQRQLQEQK-ALLE 545
Query: 1141 IIDSTSRVRGEIVDISNKFIETSRVLEQREEKFHSALDSFSDNISRILLDVDHTISSHTN 1200
T ++ ++ + + + E + S + SD L ++ N
Sbjct: 546 HKKETLEYTSQLAELLD---QQADRFELSAQAAGSQKERGSDLYREALAQNAAALNKALN 602
Query: 1201 ESRSLIEQRIHEVKDVLSNLDRALESYGSTVFKQFKEYVQCFETNMENMESLFDKNNDSM 1260
E + D + AL +Y + + Q F + M + K +
Sbjct: 603 ELAAYWSALDLLQGDWKAGALSALANYRDSATDVASQAAQLFTNAFDGMANNAAKFATTG 662
Query: 1261 LLSFKE-RSNILDNI----LSQRSMEISDSISGAFHKEGNAVVNVIDQQIYNAANA 1311
LSFK ++L ++ L I + AF + + A
Sbjct: 663 KLSFKSFTRSVLSDLAGILLQAALQIIVGLVGSAFGGALSGGGSASTGAGSVFHFA 718
>gnl|CDD|48094 cd03390, PAP2_containing_1_like, PAP2, subfamily similar to human
phosphatidic_acid_phosphatase_type_2_domain_containing_1
. Most likely membrane-associated phosphatidic acid
phosphatases. Plant members of this group are
constitutively expressed in many tissues and exhibit
both diacylglycerol pyrophosphate phosphatase activity
as well as phosphatidate (PA) phosphatase activity, they
may have a more generic housekeeping role in lipid
metabolism..
Length = 193
Score = 30.6 bits (69), Expect = 4.3
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 134 FAMRPEVITLFLVVSVVPILLFFSFFIMISRARD-MHDASQSIAGIALRLI 183
F R L L + +P+LL + + +SR RD H S IAG + LI
Sbjct: 138 FDPRGSSWRLLLAL--LPLLL--AILVAVSRTRDYRHHFSDVIAGSLIGLI 184
>gnl|CDD|144201 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A.
Length = 428
Score = 30.6 bits (70), Expect = 4.3
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 202 KEIVLMTEEIDRAISRASELEKTVRSEIEVLENNYTKS--EMRIDNITQNLKQEREAIIN 259
+ + + + I + +L K + IE L +MR+ +T K+E E +
Sbjct: 344 LKALNKIDFVIEVIRGSIDLNKAKKELIEELSEIQADYLLDMRLRRLT---KEEIEKLEK 400
Query: 260 HGTQLCTSIAEVHESLKEELSLTSEEI 286
+L IAE+ + L E L +E+
Sbjct: 401 EIEELEKEIAELEKILASEKKLWIKEL 427
>gnl|CDD|144913 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 30.4 bits (69), Expect = 4.5
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 23/104 (22%)
Query: 84 GITHIL-------QNIGKNSLNIALRNAFMSSLIWLACELGFL-IKFYTNSPMDSFYDFA 135
G+ H+ N K I +++AF+ L WL G+L I +D
Sbjct: 484 GVIHMTFGLFLGFFNHVKFKSKIDIKDAFIPQLSWLIIIFGYLVILIIYKWLVDWAKTSK 543
Query: 136 MRP---------------EVITLFLVVSVVPILLFFSFFIMISR 164
P +V + L + VPILL ++
Sbjct: 544 PAPSLLIGLINMFLFPGVQVFLVVLALVCVPILLLLKPLFLMRE 587
>gnl|CDD|38962 KOG3758, KOG3758, KOG3758, Uncharacterized conserved protein
[Function unknown].
Length = 655
Score = 30.3 bits (68), Expect = 5.0
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 1543 RQKICSTIPNIENIFSTLEEKSDQSMQVFLDSLNNKVDSFTQKLSKTSDDIALTSRRIAE 1602
R + + + +TL+E D S Q F+ L + V +K D+ L + E
Sbjct: 377 RVTFSKLVQDDSALLNTLKELEDISKQRFIGYLEDHVKKLMRKELSPPSDL-LPPPAVRE 435
Query: 1603 DLNNSRDILKRDSVSLAKEAKESAD 1627
LN +I + S E E D
Sbjct: 436 YLNLLVEIFEIYEASHTAEDGEQLD 460
>gnl|CDD|36489 KOG1275, KOG1275, KOG1275, PAB-dependent poly(A) ribonuclease,
subunit PAN2 [Replication, recombination and repair].
Length = 1118
Score = 30.3 bits (68), Expect = 5.0
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 11/121 (9%)
Query: 4 KKENKATYRDSLKEFEEQSTSD-SHENKKRHHSRKKHKYSRRDDSIESKDRQQTTLSKNF 62
K+ N Y ++ E S S R K K + + K + T +F
Sbjct: 432 KRRNAIPYFFEQRDLIEASGSHGEGSAAPTEEERGKIKVPKLYRKVPLKYSKFGTEDFDF 491
Query: 63 KQASNKQTYSGFYPANDLDNGGITHILQNIGKNSLNIALRNAFMSSL----IWLACELGF 118
+ N+ TY+G D+ N ++Q + +R+ + + L CELGF
Sbjct: 492 QD-YNQTTYAGLET--DIPNSYCNAMIQLL---YFLPPIRSIVLRHICTKEFCLLCELGF 545
Query: 119 L 119
L
Sbjct: 546 L 546
>gnl|CDD|36189 KOG0971, KOG0971, KOG0971, Microtubule-associated protein dynactin
DCTN1/Glued [Cell cycle control, cell division,
chromosome partitioning, Cytoskeleton].
Length = 1243
Score = 30.0 bits (67), Expect = 5.4
Identities = 50/269 (18%), Positives = 109/269 (40%), Gaps = 26/269 (9%)
Query: 772 AMNKSIDDVETISTALKERCQELGSDLVNHSDKVLSSLKQAQELLCTTFAQRNDSFVNAL 831
A+ + +D++ET LK +E GSD S L+Q L + D +
Sbjct: 336 ALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEK 395
Query: 832 ADNQSKFENNLVNQSHLLLDKLSSDIQKLTDIA--YSKAIDVANS-LTEIQGNVGVTLEN 888
D+Q + L+K +S++++L S+ +D A S + +++ V L
Sbjct: 396 QDHQ---------KLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAAL-- 444
Query: 889 HSQAMLEKISASN-------TLVAKTFE--ECMSNILLSYDENRQTLDKKLSDHIDVLRQ 939
++ M+E+++ N L+ +T E + + E+ + L+ L + +D+ +
Sbjct: 445 GAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKG 504
Query: 940 NLAGSENKIDGAIGSASQFIRDILD--ENSSRIESLLSCSNNSVNSTLLRSHQKFDRLLQ 997
+ +++ A + + I E + ++ L + S+ S Q +
Sbjct: 505 ARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEESQQP-PSVDP 563
Query: 998 EKSDELIQLLDNKASCLSTAVSTQTINLE 1026
E D I+ ++KA + + + I +
Sbjct: 564 ETFDYKIKFAESKAYARAIEMQLRQIEVA 592
>gnl|CDD|144876 pfam01442, Apolipoprotein, Apolipoprotein A1/A4/E domain. These
proteins contain several 22 residue repeats which form a
pair of alpha helices. This family includes:
Apolipoprotein A-I, Apolipoprotein A-IV, and
Apolipoprotein E.
Length = 191
Score = 29.9 bits (68), Expect = 6.5
Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 21/147 (14%)
Query: 190 SEKMQSISSAVRKEIVLMTEEID-RAISRASELEKTVRSEIEVLENNYTKSEMRIDNITQ 248
K+ +R+ + EE+ R A EL + + E E+R D + Q
Sbjct: 62 KAKVGQNLEELRQRLAPYAEELRERLNRDAEELRRKLAPYAE---------ELR-DRLRQ 111
Query: 249 NLKQEREAIINHGTQLCTSIAEVHESLKEELSLTSEEISVHLSRAIDSFQSIVDVRIAKV 308
N++ R + + +L +AE E LKE + +EE LS ++ + K+
Sbjct: 112 NVEALRARLGPYVEELRQKLAERLEELKESVGPYAEEYKAQLSEQVEELRE-------KL 164
Query: 309 TEKTTRIVQE---SAQTISSKIDQLLE 332
+ ++ A+ + ++ QLLE
Sbjct: 165 EPYAEDLREKLEPYAEDLKKQLAQLLE 191
>gnl|CDD|33405 COG3605, PtsP, Signal transduction protein containing GAF and PtsI
domains [Signal transduction mechanisms].
Length = 756
Score = 29.9 bits (67), Expect = 7.0
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 1583 TQKLSKTSDDIALTSRRIAEDLNNSR----DILKRDSVSLAKEAKESADTIR 1630
L+ ++ D R+ L + R +LKR V L KE + D R
Sbjct: 202 ENVLNASTLDPDAERERLTGALESLRASIRRMLKRRDVGLEKEHRAVFDLYR 253
>gnl|CDD|39920 KOG4722, KOG4722, KOG4722, Zn-finger protein [General function
prediction only].
Length = 672
Score = 29.6 bits (65), Expect = 7.5
Identities = 37/185 (20%), Positives = 63/185 (34%), Gaps = 26/185 (14%)
Query: 1483 SIQSSFIKIDGTLSNIETRSRDTVRLIDHNLADIGNKTVKTIDSNFVTLKEKSYDL-SNH 1541
I + DGT +NIE D DH LA+ T + + E S D+ ++
Sbjct: 8 IIFKGKFEGDGTSNNIELHPIDEEHSCDHPLAEKTQFTTSHLADS-----ENSEDIPADP 62
Query: 1542 MRQKICSTIPNIENIFSTLEEKSDQSMQVFLDSLNNKVDSFTQKLSKTSDDIALTSRRIA 1601
S F + + +QV K D A R
Sbjct: 63 TPSSEISAPHIDTECFGVMLQAGTPPLQV--------------NEEKEKADEA----REE 104
Query: 1602 EDLNNSRDILKRDSVSLAKEAKESADTIRSAIEEQINTLKDFQKLITDSVKNNAASYNKG 1661
+ + S D L+ + +LA + + AD I +A+EE I ++ ++ +
Sbjct: 105 NEEDES-DALEEMAENLAIK-EAEADEIDAALEEAIAMAAAEEEQEHREIEAELEKEDIK 162
Query: 1662 LHSDE 1666
+ D
Sbjct: 163 IEKDN 167
>gnl|CDD|153294 cd07610, FCH_F-BAR, The Extended FES-CIP4 Homology (FCH) or F-BAR
(FCH and Bin/Amphiphysin/Rvs) domain, a dimerization
module that binds and bends membranes. F-BAR domains
are dimerization modules that bind and bend membranes
and are found in proteins involved in membrane dynamics
and actin reorganization. F-BAR domain containing
proteins, also known as Pombe Cdc15 homology (PCH)
family proteins, include Fes and Fer tyrosine kinases,
PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and
srGAPs. Many members also contain an SH3 domain and play
roles in endocytosis. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
These tubules have diameters larger than those observed
with N-BARs. The F-BAR domains of some members such as
NOSTRIN and Rgd1 are important for the subcellular
localization of the protein.
Length = 191
Score = 29.6 bits (67), Expect = 7.6
Identities = 29/191 (15%), Positives = 63/191 (32%), Gaps = 17/191 (8%)
Query: 555 ERLENTLTNSINSLKDMLE--EKRQRIDSDIGKKSEELCSSFNSSYQKVSNVISDREKLF 612
E LE ++ LKD+ E +KR I+ + K ++L F+ + +
Sbjct: 3 ELLEKRTELGLDLLKDLREFLKKRAAIEEEYAKNLQKLAKKFSKKPESGKTSLGTSWNSL 62
Query: 613 SNSLARVQSHFEETIAGHPQSIVDSISNSTNNLYDKIMVLAAALSESQKSLDNSLKAHAT 672
+ EE +S +K+ E ++ A
Sbjct: 63 REETESAATVHEELSE--------KLSQLIREPLEKVK-------EDKEQARKKELAEGE 107
Query: 673 DVVHKITNAENQLVNRFDESSKNIICSYNSSNNKLETIFQKHLHSFNDTFNNKSDHVSGI 732
+ K+ +L + DE + + N + ++ E + + + + + +
Sbjct: 108 KLKKKLQELWAKLAKKADEEYREQVEKLNPAQSEYEEEKLNKIQAEQEREEERLEILKDN 167
Query: 733 LKNSTQHIDDL 743
LKN I ++
Sbjct: 168 LKNYINAIKEI 178
>gnl|CDD|30943 COG0598, CorA, Mg2+ and Co2+ transporters [Inorganic ion transport
and metabolism].
Length = 322
Score = 29.6 bits (66), Expect = 7.9
Identities = 26/165 (15%), Positives = 64/165 (38%), Gaps = 13/165 (7%)
Query: 1130 LLQNNDVITNQIIDSTSRVRGEIVDISNKFIETSRVLEQREEKFHSALDSFSDNISRILL 1189
++ +IT + + + + + + + +E ++ LD+ DN +L
Sbjct: 103 IVGKRRLITIRHRPLPA-----FDRVRERLEKGTLLTRGADELLYALLDAIVDNYFPVLE 157
Query: 1190 ----DVDHTISSHTNESRSLIEQRIHEVKDVLSNLDRALESYGSTVFKQFKEYVQCFETN 1245
+++ + + +R+ E++ L L RAL + + + +
Sbjct: 158 QIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEE 217
Query: 1246 M-ENMESLFDKN--NDSMLLSFKER-SNILDNILSQRSMEISDSI 1286
E + + D ML + +ER S++LD LS + ++ +
Sbjct: 218 DREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIM 262
>gnl|CDD|36190 KOG0972, KOG0972, KOG0972, Huntingtin interacting protein 1 (Hip1)
interactor Hippi [Signal transduction mechanisms].
Length = 384
Score = 29.6 bits (66), Expect = 8.5
Identities = 27/117 (23%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 1301 IDQQIYNAANALKKLEALLISDVEKITNRITDSSQDVTTIISD---ATDSLNKVDERLHQ 1357
I+Q++ N L KL + +EKI +R + + +++ ATD+L+++ E+ Q
Sbjct: 239 IEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQ 298
Query: 1358 TTNRITETTGHIDTVLAESSKLFEKKIKDLGEISR--VSLLQMSEIVSKFDKNSQIL 1412
+ ++ T +D V+ E +L ++++++ G L+++ + VSK + +Q +
Sbjct: 299 ASVGVSSRTETLDEVMDEIEQL-KQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTM 354
>gnl|CDD|37994 KOG2783, KOG2783, KOG2783, Phenylalanyl-tRNA synthetase
[Translation, ribosomal structure and biogenesis].
Length = 436
Score = 29.6 bits (66), Expect = 8.7
Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 12/114 (10%)
Query: 477 ITDFSSFYKDNLSEFESNLQGN----IDKLQGCFAD-------SHGNMEDLFLSNIQTIG 525
I F SF + L +F K C+ D G E+ F I+T+
Sbjct: 316 IRLFWSFDERFLKQFSPGKIEPKFKPYSKYPPCYKDISFWLPQDKGFDENDFYDVIRTVA 375
Query: 526 SNLDKKTLLFEDILSKKQNNISQITSMNTERLENTLTNS-INSLKDMLEEKRQR 578
+L + L + K S + +E LT +NS++ + + +
Sbjct: 376 GDLVESVKLIDQFTHPKTGKTSLCYRIVYRSMERALTQEEVNSIQSQIRSELVQ 429
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.311 0.126 0.328
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 18,684,690
Number of extensions: 956689
Number of successful extensions: 2898
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2865
Number of HSP's successfully gapped: 172
Length of query: 1828
Length of database: 6,263,737
Length adjustment: 108
Effective length of query: 1720
Effective length of database: 3,929,965
Effective search space: 6759539800
Effective search space used: 6759539800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (28.7 bits)