RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer
[Candidatus Liberibacter asiaticus str. psy62]
(1828 letters)
>gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle.
Length = 1179
Score = 38.1 bits (89), Expect = 0.021
Identities = 50/311 (16%), Positives = 115/311 (36%), Gaps = 46/311 (14%)
Query: 199 AVRKEIVLMTEEIDRAISRASELEK---TVRSEIEVLENNYTKSEMRIDNITQNLKQERE 255
R+EI + E+I+ + +ELEK +R E+E LE + ++ +++ + R+
Sbjct: 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK 733
Query: 256 AIINHGTQLCTSIAEVHESLKEELSLTSEEISVHLSRAIDSFQSIV--DVRIAKVTEKTT 313
+ + E L +EL+ EI R ++ + + + I ++ +
Sbjct: 734 DLARL-EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE 792
Query: 314 RIVQESAQTISSKIDQLLEVLHSTSIVITKDFDNRIESLSNTLNNSGRSLANQVGNYTLM 373
++ +E + + +D+L L + + R+ESL + + R L
Sbjct: 793 QL-KEELKALREALDELRAELTLLNEEAA-NLRERLESLERRIAATERRL---------- 840
Query: 374 LGNNTDKVSIALKEQSQQFMQAFTSHICEMSNFFSEKQKSITVTLN--DVLQSLRISLQE 431
+ E+ + +++ + I E+ E + + LN L+ L+
Sbjct: 841 ------EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS 894
Query: 432 KEDSFCSNLKSTTDNTLREVDNRTNTLENRITAFLKEIVETFNNSITDFSSFYKDNLSEF 491
+ + LRE++++ + L + L+E + L
Sbjct: 895 ELEEL--------SEELRELESKRSELRRELEE-LREKLAQLEL-----------RLEGL 934
Query: 492 ESNLQGNIDKL 502
E + ++L
Sbjct: 935 EVRIDNLQERL 945
>gnl|CDD|162135 TIGR00963, secA, preprotein translocase, SecA subunit. The proteins
SecA-F and SecY, not all of which are necessary, comprise
the standard prokaryotic protein translocation apparatus.
Other, specialized translocation systems also exist but
are not as broadly distributed. This model describes
SecA, an essential member of the apparatus.
Length = 745
Score = 37.2 bits (87), Expect = 0.043
Identities = 32/173 (18%), Positives = 68/173 (39%), Gaps = 28/173 (16%)
Query: 1094 REFFGDNIVAFMDE-------------ISKVMEISEKRISQRTQEISQQLLQNNDVITNQ 1140
R F GD + M +++ +E ++KR+ R +I +QLL+ +DV+ Q
Sbjct: 522 RIFGGDRLEGLMRRLGLEDDEPIESKMVTRALESAQKRVEARNFDIRKQLLEYDDVLNKQ 581
Query: 1141 ----------IIDSTSRVRGEIVDISNKFIETSRVLEQREEKFHSALDS--FSDNISRIL 1188
I++S + I+ + ++ E+K D + + +
Sbjct: 582 REVIYAERRRILESED-LSELILQMLESTLDEIVDAYINEQKPSEEWDLEGLIEKLKTLF 640
Query: 1189 LDVDH-TISSHTNESRSLIEQRIHE-VKDVLSNLDRALESYGSTVFKQFKEYV 1239
L T N + +++ + E ++ + LES + ++F+ YV
Sbjct: 641 LLDGDLTPEDLENLTSEDLKELLLEKIRAAYDEKEAELESERPGLMREFERYV 693
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. These
proteins are found in P. falciparum, P. vivax and P.
yoelii.
Length = 2757
Score = 35.4 bits (81), Expect = 0.13
Identities = 97/468 (20%), Positives = 201/468 (42%), Gaps = 57/468 (12%)
Query: 527 NLDKKTLLFEDILSKKQNNISQITSMNTERLENTLT---NSINSLKDMLEEKRQRIDSDI 583
N + K L +D+ SK +I +M T +E L+ N N L D++ E ++ I +I
Sbjct: 691 NTEDKAKL-DDLKSKIDKEYDKIQNMETATVELHLSNIENKKNELLDIIVEIKKHIHGEI 749
Query: 584 GKKSEELCSSFNSSYQKVSNVISDREK------LFSNSLARVQSHFEETIAGHPQSIVDS 637
K ++ F + +++SN I+D K + + ++ +++H+ + I +I +
Sbjct: 750 NKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQI-----NIDNI 804
Query: 638 ISNSTNNLYDK----IMVLAAALSESQKSLDNSLKAHATDVVHKITNAENQLVNRFDESS 693
YDK I ++ E K + N +K D ++K+ N N E
Sbjct: 805 KDEDAKQNYDKSKEYIKTISIKEDEIFKII-NEMKFMKDDFLNKVDKFIN-FENNCKEKI 862
Query: 694 KNIICSYNSSNNKLET-IFQKHLHSFNDTFNNKSDHVSGILKNSTQHIDDLFSNNAKRME 752
+ + NK++ I L+ + FN+ ++ I K+ + ++ N K+++
Sbjct: 863 DSEHEQFAELTNKIKAEISDDKLNDYEKKFNDSKSLINEINKSIEEEYQNI--NTLKKVD 920
Query: 753 ELLHSGSANIES------ELSAISKAMNKSIDDVETISTALKERCQELGSDLVNHSDKVL 806
E + ES + + + + +NK+ID ++ + K + + L++ +++
Sbjct: 921 EYIKICENTKESIEKFHNKQNILKEILNKNIDTIKESNLIEKSYKDKFDNTLIDKINELD 980
Query: 807 SSLKQAQELLCTTFAQRND--SFVNALADNQSKFENNLVNQSHLLLDKLSSDIQK----- 859
+ K A L A+ N+ + N L N K + N++ +K ++DI++
Sbjct: 981 KAFKDAS--LNDYEAKNNELIKYFNDLKANLGKNKENMLYHQFDEKEKATNDIEQKIEDA 1038
Query: 860 ---LTDIAYSKAIDVANSLTEIQGNVGVTLENHSQAMLEKISASNTLVAKTFEECM---- 912
+ +I + + N + EI+ +G +E ++ +LE+ + T + E+
Sbjct: 1039 NKNIPNIEIAIHTSIYNIIDEIEKEIGKNIELLNKEILEEAEINITNFNEIKEKLKHYNF 1098
Query: 913 ------SNILLSYDENR-----QTLDKKLSDHIDVLRQNLAGSENKID 949
NI + + N+ + LD+K+ HI L + SEN ID
Sbjct: 1099 DDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYID 1146
>gnl|CDD|162151 TIGR00996, Mtu_fam_mce, virulence factor Mce family protein. Members
of this paralogous family are found as six tandem
homologous proteins in the same orientation per cassette,
in four separate cassettes in Mycobacterium tuberculosis.
The six members of each cassette represent six
subfamilies. One subfamily includes the protein mce
(mycobacterial cell entry), a virulence protein required
for invasion of non-phagocytic cells.
Length = 291
Score = 35.3 bits (82), Expect = 0.17
Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 13/141 (9%)
Query: 929 KLSDHIDVLRQNLAGSENKIDGAIGSASQFIRDILDENSSRIESLLSCSNNSVNSTLLRS 988
KL+ ++ L + LAG ++ + +Q L+ I +L+ + N V L
Sbjct: 150 KLNAILNALAEALAGQGPQLRNLLDGLAQLTAA-LNARDGDIGALID-NLNRVLDVLADR 207
Query: 989 HQKFDRL----------LQEKSDELIQLLDNKASCLSTAVSTQTINLENNLKEQEKSLSR 1038
+ DRL L ++ D L L S S V NL + +L+
Sbjct: 208 SDQLDRLLDNLATLTAQLADRDDALDDALAA-LSGASAQVRDLLAENRPNLPQALANLAP 266
Query: 1039 VVDTSASSFKYLSDSIQTLAQ 1059
V+ L + L
Sbjct: 267 VLTLLVDYHPELEQLLHLLPT 287
>gnl|CDD|183457 PRK12344, PRK12344, putative alpha-isopropylmalate/homocitrate
synthase family transferase; Provisional.
Length = 524
Score = 33.9 bits (79), Expect = 0.36
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 728 HVSGILKNST--QHIDDLFSNNAKRM--EELLHSGSANIESELSAISKAMNKSIDDVETI 783
HVS +LK+ +HID N +R+ EL +G +NI ++ + ++K ++ +
Sbjct: 304 HVSAVLKDPRTYEHIDPELVGNRRRVLVSEL--AGRSNILAKAKELGIDLDKDDPRLKRL 361
Query: 784 STALKER 790
+KE
Sbjct: 362 LERIKEL 368
>gnl|CDD|182846 PRK10929, PRK10929, putative mechanosensitive channel protein;
Provisional.
Length = 1109
Score = 32.7 bits (75), Expect = 0.91
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 1123 TQEISQQLLQNND----VITNQIIDSTSRVRGEIVDISNKFIETSRVLEQREEKFHSALD 1178
+ E+ QQL D V N ST + EI+ +S++ +E SR +Q +++ D
Sbjct: 81 SAELRQQLNNERDEPRSVPPNM---STDALEQEILQVSSQLLEKSRQAQQEQDRAREISD 137
Query: 1179 SFS 1181
S S
Sbjct: 138 SLS 140
>gnl|CDD|183693 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 32.8 bits (75), Expect = 0.99
Identities = 39/194 (20%), Positives = 75/194 (38%), Gaps = 17/194 (8%)
Query: 134 FAMRPEVITLFLVVSVVP---ILLFFSFFIMISRARDMHDASQSIAGIALRLIDPEEYSS 190
FAM ++ L L++ ++ ++L + A + +Q A L E +
Sbjct: 1 FAMSILLVILLLLIGLLLGVLVVLLKKRQRLAKEAERILQEAQKEAEEKLEAALLE--AK 58
Query: 191 EKMQSISSAVRKEIVLMTEEIDRAISRASELEKTVRSEIEVLENNYTKSEMRIDNITQNL 250
E + + R+E EE+ R R + E E L+ K +DN+ L
Sbjct: 59 ELLLRERNQQRQEARREREELQREEERLVQKE-------EQLDARAEK----LDNLENQL 107
Query: 251 KQEREAIINHGTQLCTSIAEVHESLKEELSLTSEEISVHLSRAIDS-FQSIVDVRIAKVT 309
++ +A+ +L ++ L LT E+ L + +D+ + R+ K+
Sbjct: 108 EEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIE 167
Query: 310 EKTTRIVQESAQTI 323
E+ + AQ I
Sbjct: 168 EEADLEAERKAQNI 181
>gnl|CDD|183827 PRK12906, secA, preprotein translocase subunit SecA; Reviewed.
Length = 796
Score = 32.4 bits (74), Expect = 1.0
Identities = 31/172 (18%), Positives = 71/172 (41%), Gaps = 28/172 (16%)
Query: 1094 REFFGDNIVAFMDE--------------ISKVMEISEKRISQRTQEISQQLLQNNDVIT- 1138
R F D + AF+D I++ +E ++KR+ + +QLLQ +DV+
Sbjct: 558 RRFGSDRVKAFLDRLGMNDDDQVIESRMITRQVESAQKRVEGNNYDTRKQLLQYDDVMRE 617
Query: 1139 ---------NQIIDSTSRVRGEIVDISNKFIETSRVLEQREEKFHSALDSFSDNISRILL 1189
Q+I+ ++ ++ + + ++ + + +K LD+ D I +
Sbjct: 618 QREVIYKQRMQVINEDKDLKEVLMPMIKRTVDRQVQMYTQGDKKDWDLDALRDFIVSAMP 677
Query: 1190 DVDHT-ISSHTNESRSLIEQRIHEVKDVLSNLD-RALESYGSTVFKQFKEYV 1239
D + +S +++R+ ++ V N + + T +F++ V
Sbjct: 678 DEETFDFEDLKGKSPEELKKRLLDI--VEDNYAEKEKQLGDPTQMLEFEKVV 727
>gnl|CDD|183698 PRK12715, flgK, flagellar hook-associated protein FlgK; Provisional.
Length = 649
Score = 32.0 bits (72), Expect = 1.4
Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 14/191 (7%)
Query: 1263 SFKERSNILDNILSQRSMEISDSISGAFHKEGNAVVNVIDQQIYNAANALKKLEALLISD 1322
+F ++ +D +LSQ IS + F G +N I LK+ + LL
Sbjct: 86 AFYNQAIQIDKLLSQDGSSISVPLQTFFDSIGQ--LNSTPDNIATRGVVLKQSQ-LLAQQ 142
Query: 1323 VEKITNRITDSSQDVTTIISDATDSLNKVDERLHQTT------NRITETTGHIDTVLAES 1376
+ ++ + ++ T ++++ +N++ + L + N I E H D +L +
Sbjct: 143 FNSLQTKLEEYERNSTLQVTESVKIINRITKELAEVNGKLLGNNNIPELLDHRDELLKQL 202
Query: 1377 SKLFEKKIKDLGEIS-RVSLLQMSEIVSKFDKNSQILIKSHDSLMKAQSETKLSLDKDAN 1435
S + I D G+ + V + +V+ + ++ DS+ TK+ L N
Sbjct: 203 SGYTDLSIFDQGDGTISVGIASGDMLVAGTQQRDLVVGTGKDSIFG----TKIFLSSGGN 258
Query: 1436 NLVDLTSRLVS 1446
N VD+T RL +
Sbjct: 259 NQVDITDRLTT 269
>gnl|CDD|132362 TIGR03319, YmdA_YtgF, conserved hypothetical protein YmdA/YtgF.
Length = 514
Score = 31.8 bits (73), Expect = 1.7
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 191 EKMQSISSAVRKEIVLMTEEIDRAISRASELEKTVRSEIEVL---ENNYTKSEMRIDNIT 247
E++ + + + +E+ E+ R R + E+T+ ++E L E N K E + N
Sbjct: 58 EEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKE 117
Query: 248 QNLKQEREAIINHGTQLCTSIAEVHESLKEELSLTSEE 285
+NL ++ E +L IAE E L+ LT EE
Sbjct: 118 KNLDEKEE-------ELEELIAEQREELERISGLTQEE 148
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 31.6 bits (72), Expect = 1.9
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 18/108 (16%)
Query: 86 THILQNIGKNSLNIALRNAFMSSLIWLACELGFLIKFYTNSPMDSFYDFAMRPEVITLFL 145
T +LQ++ +SL++ALRNA M C G ++ F T+ + S + L +
Sbjct: 125 TTLLQSVIGSSLSMALRNALM-------CIGGLIMMFITSPKLTSL---------VLLAV 168
Query: 146 VVSVVPILLFFSFFIMISR-ARDMHDASQSIAGIALRLIDP-EEYSSE 191
+ ++PILLF +SR ++D + S AG L I + + E
Sbjct: 169 PLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHE 216
>gnl|CDD|151058 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialized organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is part
of complex B but is not, however, required for the core
subunits to stay associated. This protein is known as
Huntington-interacting protein-1 in humans.
Length = 355
Score = 31.2 bits (71), Expect = 2.5
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 1298 VNVIDQQIYNAANALKKLEALLISDVEKITNRITDSSQDVTTIISD---ATDSLNKVDER 1354
I + + LKKL L +EKI++R + + ++ + A +L++V E+
Sbjct: 225 KKAISKSLPETKQYLKKLSQDLSKALEKISSREKHLNNQLEQLVQEYREARRTLSQVQEK 284
Query: 1355 LHQTTNRITETTGHIDTVLAESSKLFEKKIKDLGE 1389
+Q + ++E T L E S+ E+ +++ E
Sbjct: 285 YNQASQGVSELTRE----LNEISEELEQVKQEMEE 315
>gnl|CDD|79176 PRK12718, flgL, flagellar hook-associated protein FlgL;
Provisional.
Length = 510
Score = 30.9 bits (69), Expect = 3.0
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 758 GSANIESELSAISKAMNKSIDDVETISTALKERCQELGSDLVNHSDKVLSSLKQAQEL 815
+A + + L+ +K +N S+D+V T+ ++ R EL + + K LS +KQ +L
Sbjct: 414 AAAALANTLATANKKLNLSLDNVLTVQASVGARLNELEALGNTGAQKGLSYVKQLSDL 471
>gnl|CDD|180936 PRK07334, PRK07334, threonine dehydratase; Provisional.
Length = 403
Score = 31.0 bits (71), Expect = 3.3
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 164 RARDMHDASQSIA-GIALRLIDPEEYSSEKMQSISSAVRKEIVLMTE-EIDRAISRASEL 221
+ + +IA GIA++ P + + E I + +I+L++E +I++A+S E+
Sbjct: 217 KGVALPCGGSTIAEGIAVK--QPGQLTLE----IVRRLVDDILLVSEADIEQAVSLLLEI 270
Query: 222 EKTV 225
EKTV
Sbjct: 271 EKTV 274
>gnl|CDD|178530 PLN02942, PLN02942, dihydropyrimidinase.
Length = 486
Score = 31.0 bits (70), Expect = 3.4
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 436 FCSNLKSTTDNTLREVDNRTNTLENRITAFLKEIVETFNNSITDF 480
F S K+ + R++ N N +E R+ +VE+ S TD+
Sbjct: 323 FNSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQISPTDY 367
>gnl|CDD|177585 PHA03332, PHA03332, membrane glycoprotein; Provisional.
Length = 1328
Score = 30.7 bits (69), Expect = 3.6
Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 16/145 (11%)
Query: 1017 AVSTQTINLENNLKEQEKSLSRVVDTSASSFKYLSDSIQTLAQELVSVIGSMSQSTTDIS 1076
AV+T +N ++ + + SD I L + IS
Sbjct: 877 AVATLYVNQLLQATAATAEMASKIGGLNARVDKTSDVITKLGDTIAK-----------IS 925
Query: 1077 GKLEISLDSVNQKIQKCREFFGDNIVAFMDEISKVMEISEKRISQRTQEI-----SQQLL 1131
L+ ++ +VN ++ + +A + + ++ + + I +
Sbjct: 926 ATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQLKELGTTTNERIEEVMAAALYY 985
Query: 1132 QNNDVITNQIIDSTSRVRGEIVDIS 1156
Q + +TNQ+ S S++ ++
Sbjct: 986 QQLNSLTNQVTQSASKLGYQVGMYR 1010
>gnl|CDD|183692 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 30.5 bits (70), Expect = 3.9
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 21/106 (19%)
Query: 199 AVRKEIVL-MTEEIDRAISRASELEKTV---RSEIEVLENNYTKSEMRIDNITQNLKQER 254
A++KE +L EEI + +E EK + R+E++ LE + E +D + L++
Sbjct: 53 AIKKEALLEAKEEIHK---LRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKRE 109
Query: 255 EAIIN----------HGTQLCTSIAEVHESLKEEL----SLTSEEI 286
E + + + E+ E +EL LT+EE
Sbjct: 110 EELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEA 155
>gnl|CDD|180223 PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase
subunit alpha; Validated.
Length = 319
Score = 30.5 bits (70), Expect = 4.6
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 1088 QKIQKCREFFGDNIVAFMDEISKVMEISEKRISQRTQEISQQL 1130
KI++ R D+ V +EI ++ EK++ + T++I L
Sbjct: 17 AKIEELRAVAEDSDVDLSEEIERL----EKKLEELTKKIYSNL 55
>gnl|CDD|178415 PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.
Length = 569
Score = 30.2 bits (68), Expect = 4.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 725 KSDHVSGILKNSTQHIDDLFSNNAKRMEELLHSGSANIE 763
K G+L + D FS N+K ME LL +++
Sbjct: 24 KRSFCLGVLPDGVDRNSDAFSANSKAMEGLLSELRSHVA 62
>gnl|CDD|183683 PRK12686, PRK12686, carbamate kinase; Reviewed.
Length = 312
Score = 30.4 bits (69), Expect = 5.0
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 15/78 (19%)
Query: 334 LHSTSIVITKDFDNRIESLSNTLNNSGRSLANQVGNYTLMLGNNTDKVSIALKEQSQQFM 393
L VI KDF + LA Q+ L++ + V I + +QQ +
Sbjct: 203 LKGVEAVIDKDF-------------ASEKLAEQIDADLLIILTGVENVFINFNKPNQQKL 249
Query: 394 QAFTSHICEMSNFFSEKQ 411
T + E + +E Q
Sbjct: 250 DDIT--VAEAKQYIAEGQ 265
>gnl|CDD|184388 PRK13909, PRK13909, putative recombination protein RecB; Provisional.
Length = 910
Score = 30.3 bits (69), Expect = 5.3
Identities = 25/129 (19%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 1099 DNIVAFMDEISKVMEISEKRISQRTQEISQQLLQNNDVITNQIIDS--TSRVR--GEIVD 1154
+ + ++E+ + + +S++ + + ++ Q+ L + I+ ID+ +R +
Sbjct: 59 EKEESELNELEEKLGLSKEELLNKRDKVYQEFLNSELKIST--IDAFFQKILRKFCLNLG 116
Query: 1155 ISNKFIETSRVLEQREEKFHSALDSFSDNISRILLDVDHTISSHTNESRSLIEQRIHEVK 1214
+S F E+ EKF SAL + + +L + S N L+E +++E
Sbjct: 117 LSPDFSIKEDTKEELNEKFLSALS--KEELLELLAFIKQCESKKNNSFFELLE-KLYEKN 173
Query: 1215 DVLSNLDRA 1223
+ L ++A
Sbjct: 174 NELKLFEKA 182
>gnl|CDD|178423 PLN02829, PLN02829, Probable galacturonosyltransferase.
Length = 639
Score = 29.8 bits (67), Expect = 6.1
Identities = 30/157 (19%), Positives = 64/157 (40%), Gaps = 6/157 (3%)
Query: 136 MRPEVITLFLVVSVVPILLF----FSFFIMISRARDMHD-ASQSIAGIALRL-IDPEEYS 189
+R V+ L L+ + PILL+ + F S+ + D + ++ G A +L + P+E S
Sbjct: 5 LRNLVLGLLLLTVLSPILLYTDRLSASFTPSSKRDFLEDVTALTLGGDASKLNVLPQESS 64
Query: 190 SEKMQSISSAVRKEIVLMTEEIDRAISRASELEKTVRSEIEVLENNYTKSEMRIDNITQN 249
S + I E + + E R ++ +++++ I +TQ
Sbjct: 65 SSLKEPIGIVYSDNSSKTIEPDSQDLLLDKRGEHKARVLSATDDDTHSQTDDIIKQVTQK 124
Query: 250 LKQEREAIINHGTQLCTSIAEVHESLKEELSLTSEEI 286
Q+ +Q ++ ++ + TSE++
Sbjct: 125 AGQDDSDQQEKNSQSQSASQAESLEHVQQSAQTSEKV 161
>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 699
Score = 29.7 bits (66), Expect = 6.7
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 917 LSYDENRQTLDKKLSDHIDV----LRQNLAG-SENKIDGAIGSASQFIRDILDENSSRIE 971
L + N Q++D+KLSD + +R +LAG K F R LD N +I
Sbjct: 85 LGLEPNAQSIDEKLSDLPYLIARKIRDSLAGLVSAKFKAEKQEEKDFSRLALDCNEIKI- 143
Query: 972 SLLSCSNNSVNSTLLRSHQKFDRLLQEKSDELIQLLDNKASCLSTAVSTQTINLEN 1027
+L S+ S L S LL++K +L + N A+C + + T ++ N
Sbjct: 144 -VLHIEMPSIRSKLYPSSSDLANLLKDKF-KLSEFTKNFANCYAEPIFTNISHINN 197
>gnl|CDD|183821 PRK12899, secA, preprotein translocase subunit SecA; Reviewed.
Length = 970
Score = 29.8 bits (67), Expect = 6.8
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 1086 VNQKIQKCREFFGDNIVAFMDEISKVMEISEKRISQRTQEISQQLLQNNDVITNQ 1140
+N I+ R G+ + M ++++E ++KR+ R I + L+ +DV+ Q
Sbjct: 693 LNTLIRHFRPPEGEAMSDPM--FNRLIETAQKRVEGRNYTIRKHTLEYDDVMNKQ 745
>gnl|CDD|182409 PRK10361, PRK10361, DNA recombination protein RmuC; Provisional.
Length = 475
Score = 30.0 bits (67), Expect = 6.9
Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 590 LCSSFNSSYQKVSNVISDREKLFSNSLARVQSHFEETIAGHPQSIVDSISNSTNNLYDKI 649
L +S+ + QK + E + S A+ Q E H ++ + ++N +L
Sbjct: 21 LFASYQHAQQKAEQLAEREEMVAELSAAKQQITQSE----HWRAECELLNNEVRSLQSIN 76
Query: 650 MVLAAALSESQKSLDNSLKAHATDVVHKITNAENQLVNRFDESSKNIICSYNSSNNKLET 709
L A L E ++ + + HA D + ++ N+E +L +F+ + I + SN +++
Sbjct: 77 TSLEADLREVTTRME-AAQQHADDKIRQMINSEQRLSEQFENLANRI---FEHSNRRVDE 132
Query: 710 IFQKHLHSF 718
++ L+S
Sbjct: 133 QNRQSLNSL 141
>gnl|CDD|178527 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 29.9 bits (67), Expect = 7.0
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 26/161 (16%)
Query: 960 RDILDENSSRIESLLSCSNNSVNSTLLRSHQKFDRLLQEKSDELIQLLDNKASCLSTAVS 1019
R +LD + +ES + V+ S ++D EK + L LLD + + A
Sbjct: 266 RSLLDASLRELESKFIVAQEDVSKL---SPLQYD-CWWEKVENLQDLLDRATNQVEKAAL 321
Query: 1020 T--QTINLENNLKEQEKSLSRVVDTSASSFKYLSDSIQTLAQELVSVIGSMSQSTTDISG 1077
Q +L + + + E SL A+ K+ S ++ L Q+L
Sbjct: 322 VLDQNQDLRDKVDKLEASLK-----EANVSKFSSYKVELLQQKLKL-------------- 362
Query: 1078 KLEISLDSVNQKIQKCREFFGDNIVAFMDEISKVMEISEKR 1118
LE L + + +I + + ++I F D +SK+ E S+KR
Sbjct: 363 -LEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKR 402
>gnl|CDD|180784 PRK06986, fliA, flagellar biosynthesis sigma factor; Validated.
Length = 236
Score = 29.8 bits (68), Expect = 7.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 1107 EISKVMEISEKRISQ 1121
EI V+ +SE R+SQ
Sbjct: 205 EIGAVLGVSESRVSQ 219
>gnl|CDD|162877 TIGR02479, FliA_WhiG, RNA polymerase sigma factor, FliA/WhiG family.
Most members of this family are the flagellar operon
sigma factor FliA, controlling transcription of bacterial
flagellar genes by RNA polymerase. An exception is the
sigma factor WhiG in the genus Streptomyces, involved in
the production of sporulating aerial mycelium.
Length = 224
Score = 29.5 bits (67), Expect = 7.7
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 1105 MDEISKVMEISEKRISQ 1121
+ EI +V+ ++E R+SQ
Sbjct: 194 LKEIGEVLGLTESRVSQ 210
>gnl|CDD|148617 pfam07111, HCR, Alpha helical coiled-coil rod protein (HCR). This
family consists of several mammalian alpha helical
coiled-coil rod HCR proteins. The function of HCR is
unknown but it has been implicated in psoriasis in
humans and is thought to affect keratinocyte
proliferation.
Length = 739
Score = 29.6 bits (66), Expect = 8.6
Identities = 19/87 (21%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 201 RKEIVLMTEEIDRAISRASELEKTVRSEIEVLENNYTKSEMRIDNITQNLKQEREAIINH 260
R+ + + ++++R + + E + +++E +S ++ Q L Q++E +
Sbjct: 516 RQRLAEVAQQLERELQESQESLASAGAQLEAARAGQQESTEEAASLRQELTQQQEV---Y 572
Query: 261 GTQLCTSIAEVHESLKEELSLTSEEIS 287
G L +AEV L+E+LS T ++
Sbjct: 573 GQALQEKVAEVETRLREQLSDTERRLN 599
>gnl|CDD|148927 pfam07580, Peptidase_M26_C, M26 IgA1-specific Metallo-endopeptidase
C-terminal region. These peptidases, which cleave
mammalian IgA, are found in Gram-positive bacteria. Often
found associated with pfam00746, they may be attached to
the cell wall.
Length = 731
Score = 29.6 bits (67), Expect = 8.7
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 8/53 (15%)
Query: 1682 KNNHAIKEWFNKI--------LSSSTHSKGKSSSHIDISDKDSLSSIDSLVEN 1726
K N +WF KI + TH L+S D L++N
Sbjct: 490 KLNGDKSKWFKKIENKYVKDRDGNDTHQWDVVRDLTAEEKAKKLTSFDDLIDN 542
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.311 0.126 0.328
Gapped
Lambda K H
0.267 0.0448 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 26,670,716
Number of extensions: 1703000
Number of successful extensions: 3761
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3693
Number of HSP's successfully gapped: 182
Length of query: 1828
Length of database: 5,994,473
Length adjustment: 107
Effective length of query: 1721
Effective length of database: 3,682,417
Effective search space: 6337439657
Effective search space used: 6337439657
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.1 bits)