RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str. psy62] (1828 letters) >gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. Length = 1179 Score = 38.1 bits (89), Expect = 0.021 Identities = 50/311 (16%), Positives = 115/311 (36%), Gaps = 46/311 (14%) Query: 199 AVRKEIVLMTEEIDRAISRASELEK---TVRSEIEVLENNYTKSEMRIDNITQNLKQERE 255 R+EI + E+I+ + +ELEK +R E+E LE + ++ +++ + R+ Sbjct: 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK 733 Query: 256 AIINHGTQLCTSIAEVHESLKEELSLTSEEISVHLSRAIDSFQSIV--DVRIAKVTEKTT 313 + + E L +EL+ EI R ++ + + + I ++ + Sbjct: 734 DLARL-EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE 792 Query: 314 RIVQESAQTISSKIDQLLEVLHSTSIVITKDFDNRIESLSNTLNNSGRSLANQVGNYTLM 373 ++ +E + + +D+L L + + R+ESL + + R L Sbjct: 793 QL-KEELKALREALDELRAELTLLNEEAA-NLRERLESLERRIAATERRL---------- 840 Query: 374 LGNNTDKVSIALKEQSQQFMQAFTSHICEMSNFFSEKQKSITVTLN--DVLQSLRISLQE 431 + E+ + +++ + I E+ E + + LN L+ L+ Sbjct: 841 ------EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS 894 Query: 432 KEDSFCSNLKSTTDNTLREVDNRTNTLENRITAFLKEIVETFNNSITDFSSFYKDNLSEF 491 + + LRE++++ + L + L+E + L Sbjct: 895 ELEEL--------SEELRELESKRSELRRELEE-LREKLAQLEL-----------RLEGL 934 Query: 492 ESNLQGNIDKL 502 E + ++L Sbjct: 935 EVRIDNLQERL 945 >gnl|CDD|162135 TIGR00963, secA, preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. Length = 745 Score = 37.2 bits (87), Expect = 0.043 Identities = 32/173 (18%), Positives = 68/173 (39%), Gaps = 28/173 (16%) Query: 1094 REFFGDNIVAFMDE-------------ISKVMEISEKRISQRTQEISQQLLQNNDVITNQ 1140 R F GD + M +++ +E ++KR+ R +I +QLL+ +DV+ Q Sbjct: 522 RIFGGDRLEGLMRRLGLEDDEPIESKMVTRALESAQKRVEARNFDIRKQLLEYDDVLNKQ 581 Query: 1141 ----------IIDSTSRVRGEIVDISNKFIETSRVLEQREEKFHSALDS--FSDNISRIL 1188 I++S + I+ + ++ E+K D + + + Sbjct: 582 REVIYAERRRILESED-LSELILQMLESTLDEIVDAYINEQKPSEEWDLEGLIEKLKTLF 640 Query: 1189 LDVDH-TISSHTNESRSLIEQRIHE-VKDVLSNLDRALESYGSTVFKQFKEYV 1239 L T N + +++ + E ++ + LES + ++F+ YV Sbjct: 641 LLDGDLTPEDLENLTSEDLKELLLEKIRAAYDEKEAELESERPGLMREFERYV 693 >gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. These proteins are found in P. falciparum, P. vivax and P. yoelii. Length = 2757 Score = 35.4 bits (81), Expect = 0.13 Identities = 97/468 (20%), Positives = 201/468 (42%), Gaps = 57/468 (12%) Query: 527 NLDKKTLLFEDILSKKQNNISQITSMNTERLENTLT---NSINSLKDMLEEKRQRIDSDI 583 N + K L +D+ SK +I +M T +E L+ N N L D++ E ++ I +I Sbjct: 691 NTEDKAKL-DDLKSKIDKEYDKIQNMETATVELHLSNIENKKNELLDIIVEIKKHIHGEI 749 Query: 584 GKKSEELCSSFNSSYQKVSNVISDREK------LFSNSLARVQSHFEETIAGHPQSIVDS 637 K ++ F + +++SN I+D K + + ++ +++H+ + I +I + Sbjct: 750 NKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQI-----NIDNI 804 Query: 638 ISNSTNNLYDK----IMVLAAALSESQKSLDNSLKAHATDVVHKITNAENQLVNRFDESS 693 YDK I ++ E K + N +K D ++K+ N N E Sbjct: 805 KDEDAKQNYDKSKEYIKTISIKEDEIFKII-NEMKFMKDDFLNKVDKFIN-FENNCKEKI 862 Query: 694 KNIICSYNSSNNKLET-IFQKHLHSFNDTFNNKSDHVSGILKNSTQHIDDLFSNNAKRME 752 + + NK++ I L+ + FN+ ++ I K+ + ++ N K+++ Sbjct: 863 DSEHEQFAELTNKIKAEISDDKLNDYEKKFNDSKSLINEINKSIEEEYQNI--NTLKKVD 920 Query: 753 ELLHSGSANIES------ELSAISKAMNKSIDDVETISTALKERCQELGSDLVNHSDKVL 806 E + ES + + + + +NK+ID ++ + K + + L++ +++ Sbjct: 921 EYIKICENTKESIEKFHNKQNILKEILNKNIDTIKESNLIEKSYKDKFDNTLIDKINELD 980 Query: 807 SSLKQAQELLCTTFAQRND--SFVNALADNQSKFENNLVNQSHLLLDKLSSDIQK----- 859 + K A L A+ N+ + N L N K + N++ +K ++DI++ Sbjct: 981 KAFKDAS--LNDYEAKNNELIKYFNDLKANLGKNKENMLYHQFDEKEKATNDIEQKIEDA 1038 Query: 860 ---LTDIAYSKAIDVANSLTEIQGNVGVTLENHSQAMLEKISASNTLVAKTFEECM---- 912 + +I + + N + EI+ +G +E ++ +LE+ + T + E+ Sbjct: 1039 NKNIPNIEIAIHTSIYNIIDEIEKEIGKNIELLNKEILEEAEINITNFNEIKEKLKHYNF 1098 Query: 913 ------SNILLSYDENR-----QTLDKKLSDHIDVLRQNLAGSENKID 949 NI + + N+ + LD+K+ HI L + SEN ID Sbjct: 1099 DDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYID 1146 >gnl|CDD|162151 TIGR00996, Mtu_fam_mce, virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells. Length = 291 Score = 35.3 bits (82), Expect = 0.17 Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 13/141 (9%) Query: 929 KLSDHIDVLRQNLAGSENKIDGAIGSASQFIRDILDENSSRIESLLSCSNNSVNSTLLRS 988 KL+ ++ L + LAG ++ + +Q L+ I +L+ + N V L Sbjct: 150 KLNAILNALAEALAGQGPQLRNLLDGLAQLTAA-LNARDGDIGALID-NLNRVLDVLADR 207 Query: 989 HQKFDRL----------LQEKSDELIQLLDNKASCLSTAVSTQTINLENNLKEQEKSLSR 1038 + DRL L ++ D L L S S V NL + +L+ Sbjct: 208 SDQLDRLLDNLATLTAQLADRDDALDDALAA-LSGASAQVRDLLAENRPNLPQALANLAP 266 Query: 1039 VVDTSASSFKYLSDSIQTLAQ 1059 V+ L + L Sbjct: 267 VLTLLVDYHPELEQLLHLLPT 287 >gnl|CDD|183457 PRK12344, PRK12344, putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional. Length = 524 Score = 33.9 bits (79), Expect = 0.36 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 6/67 (8%) Query: 728 HVSGILKNST--QHIDDLFSNNAKRM--EELLHSGSANIESELSAISKAMNKSIDDVETI 783 HVS +LK+ +HID N +R+ EL +G +NI ++ + ++K ++ + Sbjct: 304 HVSAVLKDPRTYEHIDPELVGNRRRVLVSEL--AGRSNILAKAKELGIDLDKDDPRLKRL 361 Query: 784 STALKER 790 +KE Sbjct: 362 LERIKEL 368 >gnl|CDD|182846 PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional. Length = 1109 Score = 32.7 bits (75), Expect = 0.91 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 7/63 (11%) Query: 1123 TQEISQQLLQNND----VITNQIIDSTSRVRGEIVDISNKFIETSRVLEQREEKFHSALD 1178 + E+ QQL D V N ST + EI+ +S++ +E SR +Q +++ D Sbjct: 81 SAELRQQLNNERDEPRSVPPNM---STDALEQEILQVSSQLLEKSRQAQQEQDRAREISD 137 Query: 1179 SFS 1181 S S Sbjct: 138 SLS 140 >gnl|CDD|183693 PRK12705, PRK12705, hypothetical protein; Provisional. Length = 508 Score = 32.8 bits (75), Expect = 0.99 Identities = 39/194 (20%), Positives = 75/194 (38%), Gaps = 17/194 (8%) Query: 134 FAMRPEVITLFLVVSVVP---ILLFFSFFIMISRARDMHDASQSIAGIALRLIDPEEYSS 190 FAM ++ L L++ ++ ++L + A + +Q A L E + Sbjct: 1 FAMSILLVILLLLIGLLLGVLVVLLKKRQRLAKEAERILQEAQKEAEEKLEAALLE--AK 58 Query: 191 EKMQSISSAVRKEIVLMTEEIDRAISRASELEKTVRSEIEVLENNYTKSEMRIDNITQNL 250 E + + R+E EE+ R R + E E L+ K +DN+ L Sbjct: 59 ELLLRERNQQRQEARREREELQREEERLVQKE-------EQLDARAEK----LDNLENQL 107 Query: 251 KQEREAIINHGTQLCTSIAEVHESLKEELSLTSEEISVHLSRAIDS-FQSIVDVRIAKVT 309 ++ +A+ +L ++ L LT E+ L + +D+ + R+ K+ Sbjct: 108 EEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIE 167 Query: 310 EKTTRIVQESAQTI 323 E+ + AQ I Sbjct: 168 EEADLEAERKAQNI 181 >gnl|CDD|183827 PRK12906, secA, preprotein translocase subunit SecA; Reviewed. Length = 796 Score = 32.4 bits (74), Expect = 1.0 Identities = 31/172 (18%), Positives = 71/172 (41%), Gaps = 28/172 (16%) Query: 1094 REFFGDNIVAFMDE--------------ISKVMEISEKRISQRTQEISQQLLQNNDVIT- 1138 R F D + AF+D I++ +E ++KR+ + +QLLQ +DV+ Sbjct: 558 RRFGSDRVKAFLDRLGMNDDDQVIESRMITRQVESAQKRVEGNNYDTRKQLLQYDDVMRE 617 Query: 1139 ---------NQIIDSTSRVRGEIVDISNKFIETSRVLEQREEKFHSALDSFSDNISRILL 1189 Q+I+ ++ ++ + + ++ + + +K LD+ D I + Sbjct: 618 QREVIYKQRMQVINEDKDLKEVLMPMIKRTVDRQVQMYTQGDKKDWDLDALRDFIVSAMP 677 Query: 1190 DVDHT-ISSHTNESRSLIEQRIHEVKDVLSNLD-RALESYGSTVFKQFKEYV 1239 D + +S +++R+ ++ V N + + T +F++ V Sbjct: 678 DEETFDFEDLKGKSPEELKKRLLDI--VEDNYAEKEKQLGDPTQMLEFEKVV 727 >gnl|CDD|183698 PRK12715, flgK, flagellar hook-associated protein FlgK; Provisional. Length = 649 Score = 32.0 bits (72), Expect = 1.4 Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 14/191 (7%) Query: 1263 SFKERSNILDNILSQRSMEISDSISGAFHKEGNAVVNVIDQQIYNAANALKKLEALLISD 1322 +F ++ +D +LSQ IS + F G +N I LK+ + LL Sbjct: 86 AFYNQAIQIDKLLSQDGSSISVPLQTFFDSIGQ--LNSTPDNIATRGVVLKQSQ-LLAQQ 142 Query: 1323 VEKITNRITDSSQDVTTIISDATDSLNKVDERLHQTT------NRITETTGHIDTVLAES 1376 + ++ + ++ T ++++ +N++ + L + N I E H D +L + Sbjct: 143 FNSLQTKLEEYERNSTLQVTESVKIINRITKELAEVNGKLLGNNNIPELLDHRDELLKQL 202 Query: 1377 SKLFEKKIKDLGEIS-RVSLLQMSEIVSKFDKNSQILIKSHDSLMKAQSETKLSLDKDAN 1435 S + I D G+ + V + +V+ + ++ DS+ TK+ L N Sbjct: 203 SGYTDLSIFDQGDGTISVGIASGDMLVAGTQQRDLVVGTGKDSIFG----TKIFLSSGGN 258 Query: 1436 NLVDLTSRLVS 1446 N VD+T RL + Sbjct: 259 NQVDITDRLTT 269 >gnl|CDD|132362 TIGR03319, YmdA_YtgF, conserved hypothetical protein YmdA/YtgF. Length = 514 Score = 31.8 bits (73), Expect = 1.7 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 10/98 (10%) Query: 191 EKMQSISSAVRKEIVLMTEEIDRAISRASELEKTVRSEIEVL---ENNYTKSEMRIDNIT 247 E++ + + + +E+ E+ R R + E+T+ ++E L E N K E + N Sbjct: 58 EEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKE 117 Query: 248 QNLKQEREAIINHGTQLCTSIAEVHESLKEELSLTSEE 285 +NL ++ E +L IAE E L+ LT EE Sbjct: 118 KNLDEKEE-------ELEELIAEQREELERISGLTQEE 148 >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 Score = 31.6 bits (72), Expect = 1.9 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 18/108 (16%) Query: 86 THILQNIGKNSLNIALRNAFMSSLIWLACELGFLIKFYTNSPMDSFYDFAMRPEVITLFL 145 T +LQ++ +SL++ALRNA M C G ++ F T+ + S + L + Sbjct: 125 TTLLQSVIGSSLSMALRNALM-------CIGGLIMMFITSPKLTSL---------VLLAV 168 Query: 146 VVSVVPILLFFSFFIMISR-ARDMHDASQSIAGIALRLIDP-EEYSSE 191 + ++PILLF +SR ++D + S AG L I + + E Sbjct: 169 PLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHE 216 >gnl|CDD|151058 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic cilia and flagella are specialized organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bidirectional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated. This protein is known as Huntington-interacting protein-1 in humans. Length = 355 Score = 31.2 bits (71), Expect = 2.5 Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 7/95 (7%) Query: 1298 VNVIDQQIYNAANALKKLEALLISDVEKITNRITDSSQDVTTIISD---ATDSLNKVDER 1354 I + + LKKL L +EKI++R + + ++ + A +L++V E+ Sbjct: 225 KKAISKSLPETKQYLKKLSQDLSKALEKISSREKHLNNQLEQLVQEYREARRTLSQVQEK 284 Query: 1355 LHQTTNRITETTGHIDTVLAESSKLFEKKIKDLGE 1389 +Q + ++E T L E S+ E+ +++ E Sbjct: 285 YNQASQGVSELTRE----LNEISEELEQVKQEMEE 315 >gnl|CDD|79176 PRK12718, flgL, flagellar hook-associated protein FlgL; Provisional. Length = 510 Score = 30.9 bits (69), Expect = 3.0 Identities = 17/58 (29%), Positives = 32/58 (55%) Query: 758 GSANIESELSAISKAMNKSIDDVETISTALKERCQELGSDLVNHSDKVLSSLKQAQEL 815 +A + + L+ +K +N S+D+V T+ ++ R EL + + K LS +KQ +L Sbjct: 414 AAAALANTLATANKKLNLSLDNVLTVQASVGARLNELEALGNTGAQKGLSYVKQLSDL 471 >gnl|CDD|180936 PRK07334, PRK07334, threonine dehydratase; Provisional. Length = 403 Score = 31.0 bits (71), Expect = 3.3 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 8/64 (12%) Query: 164 RARDMHDASQSIA-GIALRLIDPEEYSSEKMQSISSAVRKEIVLMTE-EIDRAISRASEL 221 + + +IA GIA++ P + + E I + +I+L++E +I++A+S E+ Sbjct: 217 KGVALPCGGSTIAEGIAVK--QPGQLTLE----IVRRLVDDILLVSEADIEQAVSLLLEI 270 Query: 222 EKTV 225 EKTV Sbjct: 271 EKTV 274 >gnl|CDD|178530 PLN02942, PLN02942, dihydropyrimidinase. Length = 486 Score = 31.0 bits (70), Expect = 3.4 Identities = 13/45 (28%), Positives = 22/45 (48%) Query: 436 FCSNLKSTTDNTLREVDNRTNTLENRITAFLKEIVETFNNSITDF 480 F S K+ + R++ N N +E R+ +VE+ S TD+ Sbjct: 323 FNSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQISPTDY 367 >gnl|CDD|177585 PHA03332, PHA03332, membrane glycoprotein; Provisional. Length = 1328 Score = 30.7 bits (69), Expect = 3.6 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 16/145 (11%) Query: 1017 AVSTQTINLENNLKEQEKSLSRVVDTSASSFKYLSDSIQTLAQELVSVIGSMSQSTTDIS 1076 AV+T +N ++ + + SD I L + IS Sbjct: 877 AVATLYVNQLLQATAATAEMASKIGGLNARVDKTSDVITKLGDTIAK-----------IS 925 Query: 1077 GKLEISLDSVNQKIQKCREFFGDNIVAFMDEISKVMEISEKRISQRTQEI-----SQQLL 1131 L+ ++ +VN ++ + +A + + ++ + + I + Sbjct: 926 ATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQLKELGTTTNERIEEVMAAALYY 985 Query: 1132 QNNDVITNQIIDSTSRVRGEIVDIS 1156 Q + +TNQ+ S S++ ++ Sbjct: 986 QQLNSLTNQVTQSASKLGYQVGMYR 1010 >gnl|CDD|183692 PRK12704, PRK12704, phosphodiesterase; Provisional. Length = 520 Score = 30.5 bits (70), Expect = 3.9 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 21/106 (19%) Query: 199 AVRKEIVL-MTEEIDRAISRASELEKTV---RSEIEVLENNYTKSEMRIDNITQNLKQER 254 A++KE +L EEI + +E EK + R+E++ LE + E +D + L++ Sbjct: 53 AIKKEALLEAKEEIHK---LRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKRE 109 Query: 255 EAIIN----------HGTQLCTSIAEVHESLKEEL----SLTSEEI 286 E + + + E+ E +EL LT+EE Sbjct: 110 EELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEA 155 >gnl|CDD|180223 PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated. Length = 319 Score = 30.5 bits (70), Expect = 4.6 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 4/43 (9%) Query: 1088 QKIQKCREFFGDNIVAFMDEISKVMEISEKRISQRTQEISQQL 1130 KI++ R D+ V +EI ++ EK++ + T++I L Sbjct: 17 AKIEELRAVAEDSDVDLSEEIERL----EKKLEELTKKIYSNL 55 >gnl|CDD|178415 PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain. Length = 569 Score = 30.2 bits (68), Expect = 4.6 Identities = 12/39 (30%), Positives = 18/39 (46%) Query: 725 KSDHVSGILKNSTQHIDDLFSNNAKRMEELLHSGSANIE 763 K G+L + D FS N+K ME LL +++ Sbjct: 24 KRSFCLGVLPDGVDRNSDAFSANSKAMEGLLSELRSHVA 62 >gnl|CDD|183683 PRK12686, PRK12686, carbamate kinase; Reviewed. Length = 312 Score = 30.4 bits (69), Expect = 5.0 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 15/78 (19%) Query: 334 LHSTSIVITKDFDNRIESLSNTLNNSGRSLANQVGNYTLMLGNNTDKVSIALKEQSQQFM 393 L VI KDF + LA Q+ L++ + V I + +QQ + Sbjct: 203 LKGVEAVIDKDF-------------ASEKLAEQIDADLLIILTGVENVFINFNKPNQQKL 249 Query: 394 QAFTSHICEMSNFFSEKQ 411 T + E + +E Q Sbjct: 250 DDIT--VAEAKQYIAEGQ 265 >gnl|CDD|184388 PRK13909, PRK13909, putative recombination protein RecB; Provisional. Length = 910 Score = 30.3 bits (69), Expect = 5.3 Identities = 25/129 (19%), Positives = 58/129 (44%), Gaps = 9/129 (6%) Query: 1099 DNIVAFMDEISKVMEISEKRISQRTQEISQQLLQNNDVITNQIIDS--TSRVR--GEIVD 1154 + + ++E+ + + +S++ + + ++ Q+ L + I+ ID+ +R + Sbjct: 59 EKEESELNELEEKLGLSKEELLNKRDKVYQEFLNSELKIST--IDAFFQKILRKFCLNLG 116 Query: 1155 ISNKFIETSRVLEQREEKFHSALDSFSDNISRILLDVDHTISSHTNESRSLIEQRIHEVK 1214 +S F E+ EKF SAL + + +L + S N L+E +++E Sbjct: 117 LSPDFSIKEDTKEELNEKFLSALS--KEELLELLAFIKQCESKKNNSFFELLE-KLYEKN 173 Query: 1215 DVLSNLDRA 1223 + L ++A Sbjct: 174 NELKLFEKA 182 >gnl|CDD|178423 PLN02829, PLN02829, Probable galacturonosyltransferase. Length = 639 Score = 29.8 bits (67), Expect = 6.1 Identities = 30/157 (19%), Positives = 64/157 (40%), Gaps = 6/157 (3%) Query: 136 MRPEVITLFLVVSVVPILLF----FSFFIMISRARDMHD-ASQSIAGIALRL-IDPEEYS 189 +R V+ L L+ + PILL+ + F S+ + D + ++ G A +L + P+E S Sbjct: 5 LRNLVLGLLLLTVLSPILLYTDRLSASFTPSSKRDFLEDVTALTLGGDASKLNVLPQESS 64 Query: 190 SEKMQSISSAVRKEIVLMTEEIDRAISRASELEKTVRSEIEVLENNYTKSEMRIDNITQN 249 S + I E + + E R ++ +++++ I +TQ Sbjct: 65 SSLKEPIGIVYSDNSSKTIEPDSQDLLLDKRGEHKARVLSATDDDTHSQTDDIIKQVTQK 124 Query: 250 LKQEREAIINHGTQLCTSIAEVHESLKEELSLTSEEI 286 Q+ +Q ++ ++ + TSE++ Sbjct: 125 AGQDDSDQQEKNSQSQSASQAESLEHVQQSAQTSEKV 161 >gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional. Length = 699 Score = 29.7 bits (66), Expect = 6.7 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 8/116 (6%) Query: 917 LSYDENRQTLDKKLSDHIDV----LRQNLAG-SENKIDGAIGSASQFIRDILDENSSRIE 971 L + N Q++D+KLSD + +R +LAG K F R LD N +I Sbjct: 85 LGLEPNAQSIDEKLSDLPYLIARKIRDSLAGLVSAKFKAEKQEEKDFSRLALDCNEIKI- 143 Query: 972 SLLSCSNNSVNSTLLRSHQKFDRLLQEKSDELIQLLDNKASCLSTAVSTQTINLEN 1027 +L S+ S L S LL++K +L + N A+C + + T ++ N Sbjct: 144 -VLHIEMPSIRSKLYPSSSDLANLLKDKF-KLSEFTKNFANCYAEPIFTNISHINN 197 >gnl|CDD|183821 PRK12899, secA, preprotein translocase subunit SecA; Reviewed. Length = 970 Score = 29.8 bits (67), Expect = 6.8 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Query: 1086 VNQKIQKCREFFGDNIVAFMDEISKVMEISEKRISQRTQEISQQLLQNNDVITNQ 1140 +N I+ R G+ + M ++++E ++KR+ R I + L+ +DV+ Q Sbjct: 693 LNTLIRHFRPPEGEAMSDPM--FNRLIETAQKRVEGRNYTIRKHTLEYDDVMNKQ 745 >gnl|CDD|182409 PRK10361, PRK10361, DNA recombination protein RmuC; Provisional. Length = 475 Score = 30.0 bits (67), Expect = 6.9 Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 8/129 (6%) Query: 590 LCSSFNSSYQKVSNVISDREKLFSNSLARVQSHFEETIAGHPQSIVDSISNSTNNLYDKI 649 L +S+ + QK + E + S A+ Q E H ++ + ++N +L Sbjct: 21 LFASYQHAQQKAEQLAEREEMVAELSAAKQQITQSE----HWRAECELLNNEVRSLQSIN 76 Query: 650 MVLAAALSESQKSLDNSLKAHATDVVHKITNAENQLVNRFDESSKNIICSYNSSNNKLET 709 L A L E ++ + + HA D + ++ N+E +L +F+ + I + SN +++ Sbjct: 77 TSLEADLREVTTRME-AAQQHADDKIRQMINSEQRLSEQFENLANRI---FEHSNRRVDE 132 Query: 710 IFQKHLHSF 718 ++ L+S Sbjct: 133 QNRQSLNSL 141 >gnl|CDD|178527 PLN02939, PLN02939, transferase, transferring glycosyl groups. Length = 977 Score = 29.9 bits (67), Expect = 7.0 Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 26/161 (16%) Query: 960 RDILDENSSRIESLLSCSNNSVNSTLLRSHQKFDRLLQEKSDELIQLLDNKASCLSTAVS 1019 R +LD + +ES + V+ S ++D EK + L LLD + + A Sbjct: 266 RSLLDASLRELESKFIVAQEDVSKL---SPLQYD-CWWEKVENLQDLLDRATNQVEKAAL 321 Query: 1020 T--QTINLENNLKEQEKSLSRVVDTSASSFKYLSDSIQTLAQELVSVIGSMSQSTTDISG 1077 Q +L + + + E SL A+ K+ S ++ L Q+L Sbjct: 322 VLDQNQDLRDKVDKLEASLK-----EANVSKFSSYKVELLQQKLKL-------------- 362 Query: 1078 KLEISLDSVNQKIQKCREFFGDNIVAFMDEISKVMEISEKR 1118 LE L + + +I + + ++I F D +SK+ E S+KR Sbjct: 363 -LEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKR 402 >gnl|CDD|180784 PRK06986, fliA, flagellar biosynthesis sigma factor; Validated. Length = 236 Score = 29.8 bits (68), Expect = 7.2 Identities = 8/15 (53%), Positives = 11/15 (73%) Query: 1107 EISKVMEISEKRISQ 1121 EI V+ +SE R+SQ Sbjct: 205 EIGAVLGVSESRVSQ 219 >gnl|CDD|162877 TIGR02479, FliA_WhiG, RNA polymerase sigma factor, FliA/WhiG family. Most members of this family are the flagellar operon sigma factor FliA, controlling transcription of bacterial flagellar genes by RNA polymerase. An exception is the sigma factor WhiG in the genus Streptomyces, involved in the production of sporulating aerial mycelium. Length = 224 Score = 29.5 bits (67), Expect = 7.7 Identities = 7/17 (41%), Positives = 13/17 (76%) Query: 1105 MDEISKVMEISEKRISQ 1121 + EI +V+ ++E R+SQ Sbjct: 194 LKEIGEVLGLTESRVSQ 210 >gnl|CDD|148617 pfam07111, HCR, Alpha helical coiled-coil rod protein (HCR). This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation. Length = 739 Score = 29.6 bits (66), Expect = 8.6 Identities = 19/87 (21%), Positives = 43/87 (49%), Gaps = 3/87 (3%) Query: 201 RKEIVLMTEEIDRAISRASELEKTVRSEIEVLENNYTKSEMRIDNITQNLKQEREAIINH 260 R+ + + ++++R + + E + +++E +S ++ Q L Q++E + Sbjct: 516 RQRLAEVAQQLERELQESQESLASAGAQLEAARAGQQESTEEAASLRQELTQQQEV---Y 572 Query: 261 GTQLCTSIAEVHESLKEELSLTSEEIS 287 G L +AEV L+E+LS T ++ Sbjct: 573 GQALQEKVAEVETRLREQLSDTERRLN 599 >gnl|CDD|148927 pfam07580, Peptidase_M26_C, M26 IgA1-specific Metallo-endopeptidase C-terminal region. These peptidases, which cleave mammalian IgA, are found in Gram-positive bacteria. Often found associated with pfam00746, they may be attached to the cell wall. Length = 731 Score = 29.6 bits (67), Expect = 8.7 Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 8/53 (15%) Query: 1682 KNNHAIKEWFNKI--------LSSSTHSKGKSSSHIDISDKDSLSSIDSLVEN 1726 K N +WF KI + TH L+S D L++N Sbjct: 490 KLNGDKSKWFKKIENKYVKDRDGNDTHQWDVVRDLTAEEKAKKLTSFDDLIDN 542 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.311 0.126 0.328 Gapped Lambda K H 0.267 0.0448 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 26,670,716 Number of extensions: 1703000 Number of successful extensions: 3761 Number of sequences better than 10.0: 1 Number of HSP's gapped: 3693 Number of HSP's successfully gapped: 182 Length of query: 1828 Length of database: 5,994,473 Length adjustment: 107 Effective length of query: 1721 Effective length of database: 3,682,417 Effective search space: 6337439657 Effective search space used: 6337439657 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 64 (29.1 bits)