RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str. psy62] (1828 letters) >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 35.2 bits (81), Expect = 0.058 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 22/96 (22%) Query: 165 ARDMHDASQSIAGIALRLIDPEEYSS----EKMQSISSAVRKEIVLMTEEIDRAIS---- 216 AR+ H + + A ++ + Y + I V E+ + E + S Sbjct: 10 AREHHSSVKY----ASPNLNMK-YRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQN 64 Query: 217 -----RASELEKTVRSEI-EVLE---NNYTKSEMRI 243 R E+ S++ + N++ K + RI Sbjct: 65 EFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRI 100 Score = 34.1 bits (78), Expect = 0.15 Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 19/96 (19%) Query: 1144 STSRVRGEIVDISNKFIETSRVLEQREEKFHSALDSFSDNISRILLDVDHTISSHTNESR 1203 S+ + +++ + R L RE + +++ + + L+ + S NE Sbjct: 15 SSVKYASPNLNMKYR----KRQLVTREAQIKDWVEN---ELEALKLEAEEIPSEDQNEFL 67 Query: 1204 SLIEQRIHE-----VKDVLSNLDRALESYGSTVFKQ 1234 + IH ++ A + +G+ +K+ Sbjct: 68 LERTREIHNEAESQLRA-------AQQQWGNDFYKR 96 Score = 31.4 bits (71), Expect = 0.94 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 22/83 (26%) Query: 254 REAIINHGT---------------QLCTSIAEVHESLKEELSLTSEEISVHLSRAIDSFQ 298 RE +H + QL T A++ + ++ EL E S + F Sbjct: 11 RE---HHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEF- 66 Query: 299 SIVDVRIAKVTEKTTRIVQESAQ 321 + R ++ + ++ AQ Sbjct: 67 --LLERTREIHNEAESQLRA-AQ 86 >3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, disease mutation, structural protein, ZU5, beta sandwich, spectrin binding; 2.75A {Homo sapiens} PDB: 3kbu_A (A:138-326) Length = 189 Score = 33.2 bits (75), Expect = 0.27 Identities = 12/158 (7%), Positives = 52/158 (32%), Gaps = 3/158 (1%) Query: 985 LLRSHQKFDRLLQEKSDELIQLLDNKASCLSTAVSTQTINLENNLKEQEKSLSRVVDTSA 1044 L + F R E + ++ L A ++ + + + +++ Sbjct: 11 LRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELID 70 Query: 1045 SSFKYLSDS--IQTLAQELVSVIGSMSQSTTDISGKLEISLDSVNQKIQKCREFFGDNIV 1102 + + L+ S + ++G + + ++ + + + + F D + Sbjct: 71 TRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERD-VH 129 Query: 1103 AFMDEISKVMEISEKRISQRTQEISQQLLQNNDVITNQ 1140 ++ + +++ + + E ++ + ++ Sbjct: 130 LLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAA 167 >1ypy_A Virion membrane protein; orthopox, variola virus, smallpox, L1, viral protein; 1.51A {Vaccinia virus} PDB: 2i9l_I (A:1-174) Length = 174 Score = 32.1 bits (73), Expect = 0.58 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 10/134 (7%) Query: 648 KIMVLAAALSESQKSLDNSLKAHATDVVHKITNAENQLVNRFDESSKNIICSYNSSNNKL 707 + V +++ LD L A AT+ +T + V ++ NI S N+ Sbjct: 49 NLTVKNMCSADADAQLDAVLSA-ATETYSGLTPEQKAYVPAMFTAALNIQTSVNTVVRDF 107 Query: 708 ETIFQKHLHSFNDTFNNKSDHVSGILKNSTQHIDDLFSNNAKRME-ELLHSGSANIESEL 766 E ++ +S V LK ID+ + E +++GS+ + Sbjct: 108 ENYVKQTCNSSAV--------VDNKLKIQNVIIDECYGAPGSPTNLEFINTGSSKGNCAI 159 Query: 767 SAISKAMNKSIDDV 780 A+ + K+ + Sbjct: 160 KALMQLTTKATTQI 173 >2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG; 1.90A {Gallus gallus} PDB: 3hgc_A (A:1-46,A:401-438) Length = 84 Score = 30.8 bits (70), Expect = 1.4 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 3/63 (4%) Query: 104 AFMSSLIWLACELGFLIKFYTNSPMDSFYDFAMRPEVITLFLVVSVVPILLFFSFFIMIS 163 FM SL LA I++Y D + LF+ S++ +L F + + Sbjct: 25 CFMGSLALLALVCTNRIQYYFLEVAGLLGDIG---GQMGLFIGASILTVLELFDYAYEVI 81 Query: 164 RAR 166 + R Sbjct: 82 KHR 84 >2nyy_A Botulinum neurotoxin type A; neurotoxin, FAB, protein antibody complex, toxin/immune system complex; 2.61A {Clostridium botulinum} PDB: 2nz9_A 3bta_A (A:420-873) Length = 454 Score = 30.2 bits (68), Expect = 2.5 Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 13/115 (11%) Query: 438 SNLKSTTDNTLREVDNRTNTLENRITAFLKE---------IVETFNNSITDFSSFYKDNL 488 +N+ D+ +++ N I FL + ++ + DF + KD L Sbjct: 340 NNINFNIDDLSSKLNESINKAMININKFLNQCSVSYLMNSMIPYGVKRLEDFDASLKDAL 399 Query: 489 SEF----ESNLQGNIDKLQGCFADSHGNMEDLFLSNIQTIGSNLDKKTLLFEDIL 539 ++ L G +D+L+ ++ LS L T ++I+ Sbjct: 400 LKYIYDNRGTLIGQVDRLKDKVNNTLSTDIPFQLSKYVDNQRLLSTFTEYIKNII 454 >2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding protein; 1.70A {Xenopus laevis} (C:) Length = 84 Score = 29.0 bits (65), Expect = 5.0 Identities = 11/47 (23%), Positives = 27/47 (57%) Query: 380 KVSIALKEQSQQFMQAFTSHICEMSNFFSEKQKSITVTLNDVLQSLR 426 ++S + E+++ ++ F ++ + ++E K TVT DV+ +L+ Sbjct: 27 RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 73 >1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} (D:) Length = 103 Score = 28.7 bits (64), Expect = 5.9 Identities = 10/41 (24%), Positives = 23/41 (56%) Query: 386 KEQSQQFMQAFTSHICEMSNFFSEKQKSITVTLNDVLQSLR 426 E+++ ++ F ++ + ++E K TVT DV+ +L+ Sbjct: 52 YEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 92 >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* (A:1-206,A:854-963) Length = 316 Score = 28.8 bits (62), Expect = 5.9 Identities = 6/85 (7%), Positives = 20/85 (23%), Gaps = 13/85 (15%) Query: 100 ALRNAFMSSLIWLACELGFLIKFYTNSPMDSFYDFAMRPEVITLFLVVSVVPILLFFSFF 159 + + + + + L++++VPI+ Sbjct: 177 KINEGIGDKIGMFFQAMATFFGGFIIGFTRTL-------------LLLAIVPIIAIAGVV 223 Query: 160 IMISRARDMHDASQSIAGIALRLID 184 M + + + G + Sbjct: 224 EMKMLSGQALKDKKELEGSGKIATE 248 >1nw3_A Histone methyltransferase DOT1L; HDOT1, histone lysine methyltransferase,; HET: SAM; 2.50A {Homo sapiens} (A:1-97) Length = 97 Score = 28.7 bits (64), Expect = 7.0 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 5/44 (11%) Query: 1546 ICSTIPNI-----ENIFSTLEEKSDQSMQVFLDSLNNKVDSFTQ 1584 +C IP++ + + KS +SMQ D N +DS Q Sbjct: 44 VCEEIPDLKLAMENYVLIDYDTKSFESMQRLCDKYNRAIDSIHQ 87 >2w2d_B Bontoxilysin-A, botulinum neurotoxin A heavy chain; metalloprotease, membrane domain, protein engineering, metal-binding, transmembrane; 2.59A {Clostridium botulinum} (B:) Length = 431 Score = 28.2 bits (63), Expect = 7.6 Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 13/116 (11%) Query: 438 SNLKSTTDNTLREVDNRTNTLENRITAFLKE---------IVETFNNSITDFSSFYKDNL 488 +N+ D+ +++ N I FL + ++ + DF + KD L Sbjct: 314 NNINFNIDDLSSKLNESINKAMININKFLNQCSVSYLMNSMIPYGVKRLEDFDASLKDAL 373 Query: 489 SEF----ESNLQGNIDKLQGCFADSHGNMEDLFLSNIQTIGSNLDKKTLLFEDILS 540 ++ L G +D+L+ ++ LS L T ++I++ Sbjct: 374 LKYIYDNRGTLIGQVDRLKDKVNNTLSTDIPFQLSKYVDNQRLLSTFTEYIKNIIN 429 >3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae} (A:1-80) Length = 80 Score = 28.1 bits (63), Expect = 8.1 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 19/90 (21%) Query: 780 VETISTALKERCQELGSDLVNHSDKVLS----SLKQAQELLCTTFAQRNDSFVNALADNQ 835 +E +TAL+ERC + SD + L++A+E+ + N NA Sbjct: 4 IEYTATALQERC----GSFCSASDILGFRAIEHLRRAKEIGLRNYDSLNYHLKNAT---- 55 Query: 836 SKFENNLVNQ--SHLLLDKLSSDIQKLTDI 863 L+ Q L ++KL + + + Sbjct: 56 -----ALLEQIVDDLSIEKLKEAVSMMLSV 80 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 28.2 bits (62), Expect = 8.9 Identities = 5/50 (10%), Positives = 12/50 (24%), Gaps = 16/50 (32%) Query: 908 FEECMSNILLSYDENRQTL--------------DKKLSD--HIDVLRQNL 941 + I N Q + ++ + I + + L Sbjct: 277 LGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEEL 326 >1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} (A:) Length = 70 Score = 28.1 bits (63), Expect = 9.1 Identities = 7/47 (14%), Positives = 22/47 (46%) Query: 380 KVSIALKEQSQQFMQAFTSHICEMSNFFSEKQKSITVTLNDVLQSLR 426 +VS + ++++ + I + + F+ TV + D+ +++ Sbjct: 23 RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.311 0.126 0.328 Gapped Lambda K H 0.267 0.0492 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 11,472,752 Number of extensions: 489365 Number of successful extensions: 1440 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1430 Number of HSP's successfully gapped: 92 Length of query: 1828 Length of database: 4,956,049 Length adjustment: 101 Effective length of query: 1727 Effective length of database: 1,541,744 Effective search space: 2662591888 Effective search space used: 2662591888 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 61 (27.8 bits)