RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer
[Candidatus Liberibacter asiaticus str. psy62]
(1828 letters)
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 35.2 bits (81), Expect = 0.058
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 22/96 (22%)
Query: 165 ARDMHDASQSIAGIALRLIDPEEYSS----EKMQSISSAVRKEIVLMTEEIDRAIS---- 216
AR+ H + + A ++ + Y + I V E+ + E + S
Sbjct: 10 AREHHSSVKY----ASPNLNMK-YRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQN 64
Query: 217 -----RASELEKTVRSEI-EVLE---NNYTKSEMRI 243
R E+ S++ + N++ K + RI
Sbjct: 65 EFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRI 100
Score = 34.1 bits (78), Expect = 0.15
Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 19/96 (19%)
Query: 1144 STSRVRGEIVDISNKFIETSRVLEQREEKFHSALDSFSDNISRILLDVDHTISSHTNESR 1203
S+ + +++ + R L RE + +++ + + L+ + S NE
Sbjct: 15 SSVKYASPNLNMKYR----KRQLVTREAQIKDWVEN---ELEALKLEAEEIPSEDQNEFL 67
Query: 1204 SLIEQRIHE-----VKDVLSNLDRALESYGSTVFKQ 1234
+ IH ++ A + +G+ +K+
Sbjct: 68 LERTREIHNEAESQLRA-------AQQQWGNDFYKR 96
Score = 31.4 bits (71), Expect = 0.94
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 22/83 (26%)
Query: 254 REAIINHGT---------------QLCTSIAEVHESLKEELSLTSEEISVHLSRAIDSFQ 298
RE +H + QL T A++ + ++ EL E S + F
Sbjct: 11 RE---HHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEF- 66
Query: 299 SIVDVRIAKVTEKTTRIVQESAQ 321
+ R ++ + ++ AQ
Sbjct: 67 --LLERTREIHNEAESQLRA-AQ 86
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, disease
mutation, structural protein, ZU5, beta sandwich,
spectrin binding; 2.75A {Homo sapiens} PDB: 3kbu_A
(A:138-326)
Length = 189
Score = 33.2 bits (75), Expect = 0.27
Identities = 12/158 (7%), Positives = 52/158 (32%), Gaps = 3/158 (1%)
Query: 985 LLRSHQKFDRLLQEKSDELIQLLDNKASCLSTAVSTQTINLENNLKEQEKSLSRVVDTSA 1044
L + F R E + ++ L A ++ + + + +++
Sbjct: 11 LRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELID 70
Query: 1045 SSFKYLSDS--IQTLAQELVSVIGSMSQSTTDISGKLEISLDSVNQKIQKCREFFGDNIV 1102
+ + L+ S + ++G + + ++ + + + + F D +
Sbjct: 71 TRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERD-VH 129
Query: 1103 AFMDEISKVMEISEKRISQRTQEISQQLLQNNDVITNQ 1140
++ + +++ + + E ++ + ++
Sbjct: 130 LLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAA 167
>1ypy_A Virion membrane protein; orthopox, variola virus, smallpox,
L1, viral protein; 1.51A {Vaccinia virus} PDB: 2i9l_I
(A:1-174)
Length = 174
Score = 32.1 bits (73), Expect = 0.58
Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 10/134 (7%)
Query: 648 KIMVLAAALSESQKSLDNSLKAHATDVVHKITNAENQLVNRFDESSKNIICSYNSSNNKL 707
+ V +++ LD L A AT+ +T + V ++ NI S N+
Sbjct: 49 NLTVKNMCSADADAQLDAVLSA-ATETYSGLTPEQKAYVPAMFTAALNIQTSVNTVVRDF 107
Query: 708 ETIFQKHLHSFNDTFNNKSDHVSGILKNSTQHIDDLFSNNAKRME-ELLHSGSANIESEL 766
E ++ +S V LK ID+ + E +++GS+ +
Sbjct: 108 ENYVKQTCNSSAV--------VDNKLKIQNVIIDECYGAPGSPTNLEFINTGSSKGNCAI 159
Query: 767 SAISKAMNKSIDDV 780
A+ + K+ +
Sbjct: 160 KALMQLTTKATTQI 173
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL
NAG; 1.90A {Gallus gallus} PDB: 3hgc_A
(A:1-46,A:401-438)
Length = 84
Score = 30.8 bits (70), Expect = 1.4
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 104 AFMSSLIWLACELGFLIKFYTNSPMDSFYDFAMRPEVITLFLVVSVVPILLFFSFFIMIS 163
FM SL LA I++Y D + LF+ S++ +L F + +
Sbjct: 25 CFMGSLALLALVCTNRIQYYFLEVAGLLGDIG---GQMGLFIGASILTVLELFDYAYEVI 81
Query: 164 RAR 166
+ R
Sbjct: 82 KHR 84
>2nyy_A Botulinum neurotoxin type A; neurotoxin, FAB, protein
antibody complex, toxin/immune system complex; 2.61A
{Clostridium botulinum} PDB: 2nz9_A 3bta_A (A:420-873)
Length = 454
Score = 30.2 bits (68), Expect = 2.5
Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 13/115 (11%)
Query: 438 SNLKSTTDNTLREVDNRTNTLENRITAFLKE---------IVETFNNSITDFSSFYKDNL 488
+N+ D+ +++ N I FL + ++ + DF + KD L
Sbjct: 340 NNINFNIDDLSSKLNESINKAMININKFLNQCSVSYLMNSMIPYGVKRLEDFDASLKDAL 399
Query: 489 SEF----ESNLQGNIDKLQGCFADSHGNMEDLFLSNIQTIGSNLDKKTLLFEDIL 539
++ L G +D+L+ ++ LS L T ++I+
Sbjct: 400 LKYIYDNRGTLIGQVDRLKDKVNNTLSTDIPFQLSKYVDNQRLLSTFTEYIKNII 454
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA
binding protein; 1.70A {Xenopus laevis} (C:)
Length = 84
Score = 29.0 bits (65), Expect = 5.0
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 380 KVSIALKEQSQQFMQAFTSHICEMSNFFSEKQKSITVTLNDVLQSLR 426
++S + E+++ ++ F ++ + ++E K TVT DV+ +L+
Sbjct: 27 RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 73
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA
binding protein; 1.90A {Gallus gallus} (D:)
Length = 103
Score = 28.7 bits (64), Expect = 5.9
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 386 KEQSQQFMQAFTSHICEMSNFFSEKQKSITVTLNDVLQSLR 426
E+++ ++ F ++ + ++E K TVT DV+ +L+
Sbjct: 52 YEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 92
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein,
PGP, cyclic peptide, membrane protein; 3.80A {Mus
musculus} PDB: 3g61_A* 3g60_A* (A:1-206,A:854-963)
Length = 316
Score = 28.8 bits (62), Expect = 5.9
Identities = 6/85 (7%), Positives = 20/85 (23%), Gaps = 13/85 (15%)
Query: 100 ALRNAFMSSLIWLACELGFLIKFYTNSPMDSFYDFAMRPEVITLFLVVSVVPILLFFSFF 159
+ + + + + L++++VPI+
Sbjct: 177 KINEGIGDKIGMFFQAMATFFGGFIIGFTRTL-------------LLLAIVPIIAIAGVV 223
Query: 160 IMISRARDMHDASQSIAGIALRLID 184
M + + + G +
Sbjct: 224 EMKMLSGQALKDKKELEGSGKIATE 248
>1nw3_A Histone methyltransferase DOT1L; HDOT1, histone lysine
methyltransferase,; HET: SAM; 2.50A {Homo sapiens}
(A:1-97)
Length = 97
Score = 28.7 bits (64), Expect = 7.0
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 1546 ICSTIPNI-----ENIFSTLEEKSDQSMQVFLDSLNNKVDSFTQ 1584
+C IP++ + + KS +SMQ D N +DS Q
Sbjct: 44 VCEEIPDLKLAMENYVLIDYDTKSFESMQRLCDKYNRAIDSIHQ 87
>2w2d_B Bontoxilysin-A, botulinum neurotoxin A heavy chain;
metalloprotease, membrane domain, protein engineering,
metal-binding, transmembrane; 2.59A {Clostridium
botulinum} (B:)
Length = 431
Score = 28.2 bits (63), Expect = 7.6
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 13/116 (11%)
Query: 438 SNLKSTTDNTLREVDNRTNTLENRITAFLKE---------IVETFNNSITDFSSFYKDNL 488
+N+ D+ +++ N I FL + ++ + DF + KD L
Sbjct: 314 NNINFNIDDLSSKLNESINKAMININKFLNQCSVSYLMNSMIPYGVKRLEDFDASLKDAL 373
Query: 489 SEF----ESNLQGNIDKLQGCFADSHGNMEDLFLSNIQTIGSNLDKKTLLFEDILS 540
++ L G +D+L+ ++ LS L T ++I++
Sbjct: 374 LKYIYDNRGTLIGQVDRLKDKVNNTLSTDIPFQLSKYVDNQRLLSTFTEYIKNIIN 429
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport,
nuclear pore complex, nucleus, phosphoprotein, protein
transport; 3.20A {Saccharomyces cerevisiae} (A:1-80)
Length = 80
Score = 28.1 bits (63), Expect = 8.1
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 19/90 (21%)
Query: 780 VETISTALKERCQELGSDLVNHSDKVLS----SLKQAQELLCTTFAQRNDSFVNALADNQ 835
+E +TAL+ERC + SD + L++A+E+ + N NA
Sbjct: 4 IEYTATALQERC----GSFCSASDILGFRAIEHLRRAKEIGLRNYDSLNYHLKNAT---- 55
Query: 836 SKFENNLVNQ--SHLLLDKLSSDIQKLTDI 863
L+ Q L ++KL + + +
Sbjct: 56 -----ALLEQIVDDLSIEKLKEAVSMMLSV 80
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 28.2 bits (62), Expect = 8.9
Identities = 5/50 (10%), Positives = 12/50 (24%), Gaps = 16/50 (32%)
Query: 908 FEECMSNILLSYDENRQTL--------------DKKLSD--HIDVLRQNL 941
+ I N Q + ++ + I + + L
Sbjct: 277 LGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEEL 326
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein;
2.30A {Pyrococcus horikoshii} (A:)
Length = 70
Score = 28.1 bits (63), Expect = 9.1
Identities = 7/47 (14%), Positives = 22/47 (46%)
Query: 380 KVSIALKEQSQQFMQAFTSHICEMSNFFSEKQKSITVTLNDVLQSLR 426
+VS + ++++ + I + + F+ TV + D+ +++
Sbjct: 23 RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.311 0.126 0.328
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 11,472,752
Number of extensions: 489365
Number of successful extensions: 1440
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1430
Number of HSP's successfully gapped: 92
Length of query: 1828
Length of database: 4,956,049
Length adjustment: 101
Effective length of query: 1727
Effective length of database: 1,541,744
Effective search space: 2662591888
Effective search space used: 2662591888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.8 bits)