RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer
[Candidatus Liberibacter asiaticus str. psy62]
(1828 letters)
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 268
Score = 34.3 bits (78), Expect = 0.098
Identities = 9/118 (7%), Positives = 33/118 (27%), Gaps = 3/118 (2%)
Query: 1142 IDSTSRVRGEIVDISNKFIETSRVLEQREEKFHSALDSFSDNISRILLDVDHTISSHTNE 1201
+ S ++ ++ + L L + + D + S+
Sbjct: 25 ATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQF 84
Query: 1202 SRSLIE---QRIHEVKDVLSNLDRALESYGSTVFKQFKEYVQCFETNMENMESLFDKN 1256
S+ + E + + + + K+ + F+ + ++ ++
Sbjct: 85 SKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRY 142
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4
[TaxId: 9606]}
Length = 144
Score = 32.1 bits (73), Expect = 0.39
Identities = 19/135 (14%), Positives = 50/135 (37%), Gaps = 15/135 (11%)
Query: 996 LQEKSDELIQLLDNKASCLSTAVSTQTINLENNLKEQEKSLSRVVDTSASSFKYLSDSIQ 1055
+Q S+++ + L + S ++ + LK + L + A +
Sbjct: 19 VQTLSEQVQEELLS--SQVTQELRALMDETMKELKAYKSELEEQLTPVAEETR------A 70
Query: 1056 TLAQELVSVIGSMSQSTTDISGKLEISLDSVNQKIQKCREFFGDNIVAFMDEISKVMEIS 1115
L++EL + + D+ G+L V + + E + + + ++
Sbjct: 71 RLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKL------- 123
Query: 1116 EKRISQRTQEISQQL 1130
KR+ + ++ ++L
Sbjct: 124 RKRLLRDADDLQKRL 138
Score = 27.9 bits (62), Expect = 8.4
Identities = 11/128 (8%), Positives = 42/128 (32%), Gaps = 6/128 (4%)
Query: 209 EEIDRAISRASELEKTVRSEIEVLENNYTKSEM------RIDNITQNLKQEREAIINHGT 262
+ R ++ E L ++ E+ + + + E +
Sbjct: 7 LALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAE 66
Query: 263 QLCTSIAEVHESLKEELSLTSEEISVHLSRAIDSFQSIVDVRIAKVTEKTTRIVQESAQT 322
+ +++ ++ + L E++ L + Q+++ ++ + +++ +
Sbjct: 67 ETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKR 126
Query: 323 ISSKIDQL 330
+ D L
Sbjct: 127 LLRDADDL 134
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 29.8 bits (67), Expect = 1.9
Identities = 21/163 (12%), Positives = 54/163 (33%), Gaps = 22/163 (13%)
Query: 268 IAEVHESLKEELSLTSEEISVHLSRAIDSFQSIVDVRIAKVTEKTTRIVQESAQ-TISSK 326
A + ++ + +S A D+ V V ++ S + T+
Sbjct: 4 KAAIERIFRQ--GIGERRLS---QDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLME- 57
Query: 327 IDQLLEVLHSTSIVITKDFDNRIESLSNTLNNSGRSLANQVGNYTLMLGNNTDKVSIALK 386
+ L + + +D+D + + R + + G + S
Sbjct: 58 -EHLKALADVLMVEGVEDYDGELFGRATV-----RRILKRAGIE---------RASSDAV 102
Query: 387 EQSQQFMQAFTSHICEMSNFFSEKQKSITVTLNDVLQSLRISL 429
+ + + T + E + ++++ TV DV +++ S+
Sbjct: 103 DLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSM 145
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 29.0 bits (64), Expect = 3.1
Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 31/302 (10%)
Query: 650 MVLAAALSESQKSLDNSLKAHATDVVHKITNAENQLVNRFDESSKNIICSYNSSNNKLET 709
V+ AA S L +L + + ++R S+ + Y
Sbjct: 194 GVVTAATS-----LITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPW 248
Query: 710 IFQKHLHSFNDTFNNKSDHVSGILKNSTQHIDDLFSNNAKRMEELLHSGSANIESELSAI 769
+ K L + V G L + I + + +E S + +A+
Sbjct: 249 LSVKLLRLLQCYPPPEDPAVRGRLTECLETILN-------KAQEPPKSKKVQHSNAKNAV 301
Query: 770 SKAMNKSIDDVETISTALKERCQELGSDLVNHSDKVLSSLKQAQELLCTT------FAQR 823
I ++ L C +LG L + + ++ L ++
Sbjct: 302 LFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTH 361
Query: 824 NDSFVNALADNQSKFEN--------NLVNQS--HLLLDKLSSDIQKLTDIAYSKAIDVAN 873
++ +NAL + + ++S ++ ++ + L YS ++
Sbjct: 362 IETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEM---LSYLETADYSIREEIVL 418
Query: 874 SLTEIQGNVGVTLENHSQAMLEKISASNTLVAKTFEECMSNILLSYDENRQTLDKKLSDH 933
+ + V + +L I + V++ + I+++ D+ + K + +
Sbjct: 419 KVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEA 478
Query: 934 ID 935
+
Sbjct: 479 LQ 480
Score = 29.0 bits (64), Expect = 3.6
Identities = 34/370 (9%), Positives = 111/370 (30%), Gaps = 24/370 (6%)
Query: 166 RDMHDASQSIAGIALRLIDPEEYSSEKMQSISSAVRKEIVLMTEEIDRAISRASELEKTV 225
D+ + + G+AL I ++ + ++ A EI + D S +
Sbjct: 110 NDLASRNPTFMGLALHCI-----ANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCL 164
Query: 226 RSEIEVLENNYTKSEMRIDNITQNLKQEREAIINHGTQLCTSIAEVHESLKEELSLTSEE 285
+ + + L + ++ T L T++A+ + + +
Sbjct: 165 -LRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVS 223
Query: 286 ISVHLSRAIDSFQSIVDVRIAKVTEKTTRIVQESAQTISSKIDQLLEVLHSTSIVITKDF 345
+ + + + ++++ + + L I
Sbjct: 224 RLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKA 283
Query: 346 DNRIESLSNTLNNSGRSLANQVGNYTLMLGNNTDKVSIALKEQSQQFMQAFTSHICEMSN 405
+S +N+ ++ + + + + + + A Q QF+Q +++ ++
Sbjct: 284 QEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACN-QLGQFLQHRETNLRYLAL 342
Query: 406 FFSEKQKSITVTLNDVLQSLRISLQEKEDSFCSNLKSTTDNTLREVDNRTNTLENRITAF 465
S + V + + + +++ + L + +R+N
Sbjct: 343 ESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSN--------- 393
Query: 466 LKEIVETFNNSITDFSSFYKDNL--------SEFESNLQGNIDKLQGCFADSHGNMEDLF 517
++IV + + ++ + ++ + +D + + + +
Sbjct: 394 AQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEV 453
Query: 518 LSNIQTIGSN 527
+ I N
Sbjct: 454 WYRVIQIVIN 463
>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin
hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii
[TaxId: 2190]}
Length = 242
Score = 28.8 bits (64), Expect = 3.6
Identities = 7/91 (7%), Positives = 26/91 (28%), Gaps = 1/91 (1%)
Query: 1008 DNKASCLSTAVSTQTINLENNLKEQEKSLSRVVDTSASSFKYLSDSIQTLAQELVSVIGS 1067
+ ++ + + V + + L +E +++
Sbjct: 141 GADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSY 200
Query: 1068 MSQSTTDISGKLEISLDSVNQ-KIQKCREFF 1097
++ G++ I+ ++ + K E
Sbjct: 201 HPGCVPEMKGQVYIAEGYASEEAVNKLYEIG 231
>d1vkja_ c.37.1.5 (A:) Heparan sulfate 3-O-sulfotransferase {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 28.8 bits (63), Expect = 4.3
Identities = 15/107 (14%), Positives = 43/107 (40%)
Query: 1706 SSHIDISDKDSLSSIDSLVENISKFIDYDAFVQLWKSYTLGEDDIFSKRLYTIKGQKVFL 1765
S H D++ ++ E+ S+ + + + S + + K +
Sbjct: 26 SLHPDVAAAENEVHFFDWEEHYSQGLGWYLTQMPFSSPHQLTVEKTPAYFTSPKVPERIH 85
Query: 1766 NLQEQYKADSALRNAIDRYISNFEEMLSEIAQSNDDSPLVQEHIMSN 1812
++ + LR+ +R +S++ ++L Q + P +++ +M +
Sbjct: 86 SMNPTIRLLLILRDPSERVLSDYTQVLYNHLQKHKPYPPIEDLLMRD 132
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.126 0.328
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,797,300
Number of extensions: 262115
Number of successful extensions: 771
Number of sequences better than 10.0: 1
Number of HSP's gapped: 769
Number of HSP's successfully gapped: 43
Length of query: 1828
Length of database: 2,407,596
Length adjustment: 98
Effective length of query: 1730
Effective length of database: 1,062,056
Effective search space: 1837356880
Effective search space used: 1837356880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.4 bits)