Query gi|254781030|ref|YP_003065443.1| hypothetical protein CLIBASIA_04660 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 20:31:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781030.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2qn0_A Neurotoxin; botulism, 34.9 15 0.00045 18.9 1.1 26 12-37 38-64 (82)
2 >1x99_A Lectin, XCL lectin; fu 17.5 38 0.0011 17.1 0.4 18 17-34 128-145 (145)
3 >2drw_A DAA, D-amino acid amid 12.3 31 0.00091 17.5 -1.2 20 15-34 15-34 (59)
4 >1pfj_A TFIIH basal transcript 7.1 1E+02 0.003 15.2 -0.2 22 4-25 2-23 (108)
5 >1y5o_A TFB1, RNA polymerase I 7.1 75 0.0022 15.8 -0.9 14 12-25 2-15 (115)
6 >1wpb_A Hypothetical protein Y 6.1 1.7E+02 0.0049 14.2 0.5 13 8-20 8-20 (60)
7 >3eaa_A EVPC; T6SS, unknown fu 4.4 2.2E+02 0.0065 13.6 0.2 11 22-32 152-162 (163)
8 >1bzk_A Protein (BAND 3 anion 3.5 2.9E+02 0.0087 13.0 0.2 10 19-28 7-16 (42)
9 >3bt3_A Glyoxalase-related enz 3.2 2.8E+02 0.0084 13.1 -0.1 24 9-32 9-32 (60)
10 >2b1h_P GP120, UG29 peptide of 3.2 3.6E+02 0.011 12.6 0.4 8 26-33 2-9 (26)
No 1
>>2qn0_A Neurotoxin; botulism, snares, protease; 1.75A {Clostridium botulinum} PDB: 3deb_A (A:197-222,A:375-430)
Probab=34.87 E-value=15 Score=18.92 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=18.8
Q ss_pred HHHHHHHCCCCCCCCH-HHCEEECCCC
Q ss_conf 0222221013358640-1110002245
Q gi|254781030|r 12 THAQRAIYDKKDGWNL-KKNIKIDNMS 37 (38)
Q Consensus 12 thaqraiydkkdgwnl-kknikidnms 37 (38)
.--..-|||-.||+|+ +++..|.+|.
T Consensus 38 NILDDNiY~I~~GFNi~~~~~Ni~~~G 64 (82)
T 2qn0_A 38 NILDDNVYDIQNGFNIPKSNLNVLFMG 64 (82)
T ss_dssp CTTSTTTCBTTTBTCCGGGTCCSTTGG
T ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCC
T ss_conf 446765313135620477653344577
No 2
>>1x99_A Lectin, XCL lectin; fungal lectin, sugar binding protein; HET: MSE; 1.40A {Xerocomus chrysenteron} (A:)
Probab=17.46 E-value=38 Score=17.09 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=14.3
Q ss_pred HHCCCCCCCCHHHCEEEC
Q ss_conf 210133586401110002
Q gi|254781030|r 17 AIYDKKDGWNLKKNIKID 34 (38)
Q Consensus 17 aiydkkdgwnlkknikid 34 (38)
.-|...|||+|.-||.|.
T Consensus 128 i~y~~~eGn~L~a~v~I~ 145 (145)
T 1x99_A 128 VVYTVAEGNNLEANVIFS 145 (145)
T ss_dssp EEEEECSSSEEEEEEEEC
T ss_pred EEEEECCCCEEEEEEEEC
T ss_conf 999985586699999869
No 3
>>2drw_A DAA, D-amino acid amidase; penicillin recognizing protein, D-stereospecific, hydrophobic, hydrolase; 2.10A {Ochrobactrum anthropi} (A:62-78,A:264-305)
Probab=12.32 E-value=31 Score=17.52 Aligned_cols=20 Identities=40% Similarity=0.649 Sum_probs=16.5
Q ss_pred HHHHCCCCCCCCHHHCEEEC
Q ss_conf 22210133586401110002
Q gi|254781030|r 15 QRAIYDKKDGWNLKKNIKID 34 (38)
Q Consensus 15 qraiydkkdgwnlkknikid 34 (38)
...|.|.|.-|..|.|||-.
T Consensus 15 dgtildqkrlwemkdnikpa 34 (59)
T 2drw_A 15 DGTILDQKRLWEMKDNIKPA 34 (59)
T ss_dssp TTSSSCHHHHHHHHTSCEEC
T ss_pred CCCCCCHHHHHHHHHHCCCC
T ss_conf 69988999999999642565
No 4
>>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} (A:)
Probab=7.07 E-value=1e+02 Score=15.18 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 2222001002222210133586
Q gi|254781030|r 4 AMNGAMVATHAQRAIYDKKDGW 25 (38)
Q Consensus 4 amngamvathaqraiydkkdgw 25 (38)
||-+--|++...++.|.|+||-
T Consensus 2 ~ms~e~v~~~~~~v~yKK~~Gt 23 (108)
T 1pfj_A 2 ATSSEEVLLIVKKVRQKKQDGA 23 (108)
T ss_dssp CSSSCCEEEEESCCBCSSCBCE
T ss_pred CCCHHHHHEEECEEEEECCCCE
T ss_conf 7555663021110588547848
No 5
>>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} (A:)
Probab=7.06 E-value=75 Score=15.75 Aligned_cols=14 Identities=36% Similarity=0.667 Sum_probs=9.9
Q ss_pred HHHHHHHCCCCCCC
Q ss_conf 02222210133586
Q gi|254781030|r 12 THAQRAIYDKKDGW 25 (38)
Q Consensus 12 thaqraiydkkdgw 25 (38)
+|.-+|.|.||||-
T Consensus 2 s~sGaasyKKkdG~ 15 (115)
T 1y5o_A 2 SHSGAAIFEKVSGI 15 (115)
T ss_dssp CSEEEEESSSCEEE
T ss_pred CCCCCEEEEECCCE
T ss_conf 96660578502427
No 6
>>1wpb_A Hypothetical protein YFBU; structural genomics, MCSG, NCS, regulatory protein, protein structure initiative, PSI; 2.00A {Escherichia coli} (A:1-60)
Probab=6.11 E-value=1.7e+02 Score=14.15 Aligned_cols=13 Identities=46% Similarity=0.491 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 0010022222101
Q gi|254781030|r 8 AMVATHAQRAIYD 20 (38)
Q Consensus 8 amvathaqraiyd 20 (38)
.|--|||||-|..
T Consensus 8 ~MeMt~aQRLILs 20 (60)
T 1wpb_A 8 TMEMTNAQRLILS 20 (60)
T ss_dssp GGGCCHHHHHHHH
T ss_pred HHCCCHHHHHHHH
T ss_conf 6123699999999
No 7
>>3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} (A:)
Probab=4.42 E-value=2.2e+02 Score=13.61 Aligned_cols=11 Identities=45% Similarity=0.930 Sum_probs=8.5
Q ss_pred CCCCCHHHCEE
Q ss_conf 35864011100
Q gi|254781030|r 22 KDGWNLKKNIK 32 (38)
Q Consensus 22 kdgwnlkknik 32 (38)
.+||+|++|-|
T Consensus 152 ~~~wd~~~nk~ 162 (163)
T 3eaa_A 152 PEGWSLITNKK 162 (163)
T ss_dssp CCEEETTTTEE
T ss_pred CEEEEHHHCCC
T ss_conf 04561130666
No 8
>>1bzk_A Protein (BAND 3 anion transport protein); human erythrocyte anion transporter, transmembrane, synthetic peptide,; NMR {Synthetic} (A:)
Probab=3.53 E-value=2.9e+02 Score=13.02 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=7.3
Q ss_pred CCCCCCCCHH
Q ss_conf 0133586401
Q gi|254781030|r 19 YDKKDGWNLK 28 (38)
Q Consensus 19 ydkkdgwnlk 28 (38)
-|-+||||.+
T Consensus 7 SD~~D~~~~q 16 (42)
T 1bzk_A 7 SDITDAFSPQ 16 (42)
T ss_dssp HHHTTSSCSH
T ss_pred HHHHHHHHHH
T ss_conf 7888763078
No 9
>>3bt3_A Glyoxalase-related enzyme, ARAC type; VOC superfamily, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.50A {Clostridium phytofermentans isdg} (A:89-148)
Probab=3.24 E-value=2.8e+02 Score=13.09 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCCCCHHHCEE
Q ss_conf 010022222101335864011100
Q gi|254781030|r 9 MVATHAQRAIYDKKDGWNLKKNIK 32 (38)
Q Consensus 9 mvathaqraiydkkdgwnlkknik 32 (38)
|+.--.|---|-|+.||+--..|+
T Consensus 9 ~ieGId~L~~~VKeNGWdQIsdI~ 32 (60)
T 3bt3_A 9 MIEGIDALHKYVKENGWDQISDIY 32 (60)
T ss_dssp EEECHHHHHHHHHHTTCCCBCCCE
T ss_pred EECCHHHHHHHHHCCCCEEECCCE
T ss_conf 968999999987544615753616
No 10
>>2b1h_P GP120, UG29 peptide of exterior membrane glycoprotein GP120; FAB-peptide complex, HIV-1, V3 loop, immmune system; 2.00A {Homo sapiens} (P:)
Probab=3.24 E-value=3.6e+02 Score=12.62 Aligned_cols=8 Identities=75% Similarity=0.875 Sum_probs=0.0
Q ss_pred CHHHCEEE
Q ss_conf 40111000
Q gi|254781030|r 26 NLKKNIKI 33 (38)
Q Consensus 26 nlkkniki 33 (38)
|.||.|||
T Consensus 2 ntkksiki 9 (26)
T 2b1h_P 2 NTKKSIKI 9 (26)
T ss_pred CCCCCEEE
T ss_conf 85542586
Done!