Query gi|254781030|ref|YP_003065443.1| hypothetical protein CLIBASIA_04660 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 23:38:10 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781030.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3k8g_A 30KLP; outmer membrane 29.1 9.8 0.00041 19.1 0.1 16 15-30 81-96 (262) 2 1y2t_A Lectin; ABL, mushroom, 14.7 35 0.0015 16.6 0.4 16 18-33 126-141 (142) 3 1y5o_A TFB1, RNA polymerase II 8.7 40 0.0017 16.3 -0.9 14 12-25 2-15 (115) 4 2ofc_A Sclerotium rolfsii lect 7.1 94 0.004 14.6 0.4 17 17-33 125-141 (142) 5 1zb7_A Neurotoxin; hexxh metal 3.9 2.7E+02 0.011 12.5 1.1 24 13-36 385-409 (455) 6 1bzk_A Protein (BAND 3 anion t 3.3 2.2E+02 0.0094 12.9 0.2 10 19-28 8-17 (43) 7 3eaa_A EVPC; T6SS, unknown fun 3.3 2.2E+02 0.0092 12.9 0.2 11 22-32 152-162 (163) 8 3ljx_A MMOQ response regulator 3.0 3.4E+02 0.014 12.1 0.9 16 23-38 2-17 (288) 9 2a8e_A Hypothetical protein YK 2.8 2.2E+02 0.0092 12.9 -0.3 16 10-25 57-72 (220) 10 1uuj_A Platelet-activating fac 2.7 2.8E+02 0.012 12.4 0.1 10 7-16 1-10 (88) No 1 >3k8g_A 30KLP; outmer membrane protein, membrane protei; 1.95A {Treponema pallidum} PDB: 3k8h_A 3k8i_A 3k8j_A Probab=29.13 E-value=9.8 Score=19.10 Aligned_cols=16 Identities=31% Similarity=0.800 Sum_probs=12.5 Q ss_pred HHHHCCCCCCCCHHHC Q ss_conf 2221013358640111 Q gi|254781030|r 15 QRAIYDKKDGWNLKKN 30 (38) Q Consensus 15 qraiydkkdgwnlkkn 30 (38) ..-|+.|||||.-+|. T Consensus 81 tdliFskkdGWe~~Kt 96 (262) T 3k8g_A 81 TNLIFSRSDGWASTKT 96 (262) T ss_dssp HTTSSCGGGTCEEEEC T ss_pred CHHEEECCCCCCCCCC T ss_conf 1100423667766434 No 2 >1y2t_A Lectin; ABL, mushroom, sugar binding protein; 1.50A {Agaricus bisporus} SCOP: b.97.1.2 PDB: 1y2u_A* 1y2v_A* 1y2w_A* 1y2x_A* Probab=14.72 E-value=35 Score=16.59 Aligned_cols=16 Identities=44% Similarity=0.557 Sum_probs=12.9 Q ss_pred HCCCCCCCCHHHCEEE Q ss_conf 1013358640111000 Q gi|254781030|r 18 IYDKKDGWNLKKNIKI 33 (38) Q Consensus 18 iydkkdgwnlkkniki 33 (38) -|.+.|||+|.-||-| T Consensus 126 ~y~~~eGn~l~a~v~i 141 (142) T 1y2t_A 126 EYTVTEGDNLKANLII 141 (142) T ss_dssp EEEECSSSEEEEEEEE T ss_pred EEEECCCCEEEEEEEE T ss_conf 9998768769999984 No 3 >1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A Probab=8.74 E-value=40 Score=16.29 Aligned_cols=14 Identities=36% Similarity=0.667 Sum_probs=9.9 Q ss_pred HHHHHHHCCCCCCC Q ss_conf 02222210133586 Q gi|254781030|r 12 THAQRAIYDKKDGW 25 (38) Q Consensus 12 thaqraiydkkdgw 25 (38) .|.-+|.|.||||- T Consensus 2 s~sGaasyKKkdG~ 15 (115) T 1y5o_A 2 SHSGAAIFEKVSGI 15 (115) T ss_dssp CSEEEEESSSCEEE T ss_pred CCCCCEEEEECCCE T ss_conf 97760588503427 No 4 >2ofc_A Sclerotium rolfsii lectin; dual specificity, sugar binding protein; 1.11A {Athelia rolfsii} PDB: 2ofd_A* 2ofe_A* Probab=7.08 E-value=94 Score=14.59 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=13.0 Q ss_pred HHCCCCCCCCHHHCEEE Q ss_conf 21013358640111000 Q gi|254781030|r 17 AIYDKKDGWNLKKNIKI 33 (38) Q Consensus 17 aiydkkdgwnlkkniki 33 (38) .-|...+|++|.-++.| T Consensus 125 ~~y~~~eGn~l~a~v~I 141 (142) T 2ofc_A 125 IVYTEAEGNDLHANLII 141 (142) T ss_dssp EEEEECSSSEEEEEEEE T ss_pred EEEEECCCCEEEEEEEE T ss_conf 99998768679999984 No 5 >1zb7_A Neurotoxin; hexxh metalloprotease; HET: FLC; 2.35A {Clostridium botulinum} Probab=3.93 E-value=2.7e+02 Score=12.49 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=16.6 Q ss_pred HHHHHHCCCCCCCCHH-HCEEECCC Q ss_conf 2222210133586401-11000224 Q gi|254781030|r 13 HAQRAIYDKKDGWNLK-KNIKIDNM 36 (38) Q Consensus 13 haqraiydkkdgwnlk-knikidnm 36 (38) --.-.||.-.||+|+. +|.++.++ T Consensus 385 lldd~iYti~eGFNi~~~nl~~n~~ 409 (455) T 1zb7_A 385 LLDNTIYTQNEGFNIASKNLKTEFN 409 (455) T ss_dssp TTCTTTCBTTTBTCCGGGTCSGGGG T ss_pred CCCCCCEECCCCCCCCCCCCCCCCC T ss_conf 5776430024565567776210037 No 6 >1bzk_A Protein (BAND 3 anion transport protein); human erythrocyte anion transporter, transmembrane, synthetic peptide; NMR {Synthetic} SCOP: j.35.1.1 Probab=3.31 E-value=2.2e+02 Score=12.86 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=7.4 Q ss_pred CCCCCCCCHH Q ss_conf 0133586401 Q gi|254781030|r 19 YDKKDGWNLK 28 (38) Q Consensus 19 ydkkdgwnlk 28 (38) -|-+||||.+ T Consensus 8 SD~~Dg~~~q 17 (43) T 1bzk_A 8 SDITDAFSPQ 17 (43) T ss_dssp HHHTTSSCSH T ss_pred HHHHHHHHHH T ss_conf 8888753178 No 7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} Probab=3.31 E-value=2.2e+02 Score=12.90 Aligned_cols=11 Identities=45% Similarity=0.930 Sum_probs=8.2 Q ss_pred CCCCCHHHCEE Q ss_conf 35864011100 Q gi|254781030|r 22 KDGWNLKKNIK 32 (38) Q Consensus 22 kdgwnlkknik 32 (38) ..||+|++|-| T Consensus 152 ~~gwd~~~nkk 162 (163) T 3eaa_A 152 PEGWSLITNKK 162 (163) T ss_dssp CCEEETTTTEE T ss_pred CEEECHHHCCC T ss_conf 22261231667 No 8 >3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A Probab=3.02 E-value=3.4e+02 Score=12.05 Aligned_cols=16 Identities=31% Similarity=0.771 Sum_probs=0.0 Q ss_pred CCCCHHHCEEECCCCC Q ss_conf 5864011100022459 Q gi|254781030|r 23 DGWNLKKNIKIDNMSS 38 (38) Q Consensus 23 dgwnlkknikidnmss 38 (38) |-||++|-+-+++..+ T Consensus 2 ~~~~~~~~~~~~~LP~ 17 (288) T 3ljx_A 2 DRWNMHKPMLCDSLPT 17 (288) T ss_dssp CCCCSSSCCCCTTCCC T ss_pred CCCCCCCHHHHCCCCC T ss_conf 5301103154321999 No 9 >2a8e_A Hypothetical protein YKTB; X-RAY, NESG, Q45498, structural genomics, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: d.296.1.1 Probab=2.77 E-value=2.2e+02 Score=12.90 Aligned_cols=16 Identities=44% Similarity=0.852 Sum_probs=0.0 Q ss_pred HHHHHHHHHCCCCCCC Q ss_conf 1002222210133586 Q gi|254781030|r 10 VATHAQRAIYDKKDGW 25 (38) Q Consensus 10 vathaqraiydkkdgw 25 (38) ||-|+.|..+--+|-| T Consensus 57 vAkHaRRtvNPP~dTW 72 (220) T 2a8e_A 57 VAKHARRSVNPPADSW 72 (220) T ss_dssp ECCCTTTCSSCCSCEE T ss_pred HHHHHHCCCCCCCCCE T ss_conf 7777511468983424 No 10 >1uuj_A Platelet-activating factor acetylhydrolase IB alpha subunit; mitosis, neurogenesis, cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 Probab=2.66 E-value=2.8e+02 Score=12.43 Aligned_cols=10 Identities=60% Similarity=0.833 Sum_probs=0.0 Q ss_pred CHHHHHHHHH Q ss_conf 2001002222 Q gi|254781030|r 7 GAMVATHAQR 16 (38) Q Consensus 7 gamvathaqr 16 (38) |||+-|.-|+ T Consensus 1 ~~miLT~rQ~ 10 (88) T 1uuj_A 1 GAMVLSQRQR 10 (88) T ss_dssp ---CCCHHHH T ss_pred CCCCCCHHHH T ss_conf 9977889999 Done!