Query gi|254781030|ref|YP_003065443.1| hypothetical protein CLIBASIA_04660 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:05:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781030.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1y2ta_ b.97.1.2 (A:) TF antig 15.4 19 0.0014 16.7 0.4 17 17-33 125-141 (142)
2 d1y5oa1 b.55.1.9 (A:2-115) RNA 11.2 16 0.0012 17.0 -0.9 13 13-25 2-14 (114)
3 d1y12a1 b.157.1.1 (A:2-162) He 3.4 1.1E+02 0.008 13.2 -0.1 11 22-32 150-160 (161)
4 d2a8ea1 d.296.1.1 (A:2-211) Hy 3.1 1.1E+02 0.0082 13.1 -0.3 18 9-26 55-72 (210)
5 d1c8ua2 d.38.1.3 (A:116-286) T 2.1 1.3E+02 0.0095 12.9 -1.0 13 6-18 154-166 (171)
6 d3b48a1 c.54.1.2 (A:1-132) Unc 2.0 2.8E+02 0.021 11.3 0.9 13 14-26 120-132 (132)
7 d1f1sa3 b.24.1.1 (A:912-984) H 2.0 2E+02 0.015 12.0 -0.2 14 14-27 10-24 (73)
8 d1n7oa2 b.24.1.1 (A:815-890) H 1.9 2.1E+02 0.015 11.9 -0.2 14 14-27 9-23 (76)
9 d1i8na_ g.10.1.2 (A:) Anti-pla 1.9 2.6E+02 0.019 11.4 0.3 17 16-32 8-24 (89)
10 d1klra_ g.37.1.1 (A:) ZFY {Hum 1.8 1.8E+02 0.013 12.2 -0.7 20 15-34 6-25 (30)
No 1
>d1y2ta_ b.97.1.2 (A:) TF antigen-binding lectin {Common mushroom (Agaricus bisporus) [TaxId: 5341]}
Probab=15.42 E-value=19 Score=16.72 Aligned_cols=17 Identities=41% Similarity=0.509 Sum_probs=13.6
Q ss_pred HHCCCCCCCCHHHCEEE
Q ss_conf 21013358640111000
Q gi|254781030|r 17 AIYDKKDGWNLKKNIKI 33 (38)
Q Consensus 17 aiydkkdgwnlkkniki 33 (38)
+-|.++|||||.-++-|
T Consensus 125 ~~y~~~eGn~l~a~v~i 141 (142)
T d1y2ta_ 125 IEYTVTEGDNLKANLII 141 (142)
T ss_dssp EEEEECSSSEEEEEEEE
T ss_pred EEEEECCCCEEEEEEEE
T ss_conf 99997668779999984
No 2
>d1y5oa1 b.55.1.9 (A:2-115) RNA polymerase II transcription factor B 73 kDa, TFB1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.22 E-value=16 Score=16.99 Aligned_cols=13 Identities=38% Similarity=0.680 Sum_probs=9.4
Q ss_pred HHHHHHCCCCCCC
Q ss_conf 2222210133586
Q gi|254781030|r 13 HAQRAIYDKKDGW 25 (38)
Q Consensus 13 haqraiydkkdgw 25 (38)
|.-+|.|.||||-
T Consensus 2 ~sGaa~yKKkdG~ 14 (114)
T d1y5oa1 2 HSGAAIFEKVSGI 14 (114)
T ss_dssp SEEEEESSSCEEE
T ss_pred CCCCEEEEECCCE
T ss_conf 7664257502436
No 3
>d1y12a1 b.157.1.1 (A:2-162) Hemolysin-corregulated protein 1, Hcp1 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.41 E-value=1.1e+02 Score=13.20 Aligned_cols=11 Identities=45% Similarity=1.223 Sum_probs=8.1
Q ss_pred CCCCCHHHCEE
Q ss_conf 35864011100
Q gi|254781030|r 22 KDGWNLKKNIK 32 (38)
Q Consensus 22 kdgwnlkknik 32 (38)
..||+|.+|.+
T Consensus 150 ~~~wdl~~n~~ 160 (161)
T d1y12a1 150 KYGWNIRQNVQ 160 (161)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEEHHHCCC
T ss_conf 67882751877
No 4
>d2a8ea1 d.296.1.1 (A:2-211) Hypothetical protein YktB {Bacillus subtilis [TaxId: 1423]}
Probab=3.06 E-value=1.1e+02 Score=13.14 Aligned_cols=18 Identities=39% Similarity=0.693 Sum_probs=13.9
Q ss_pred HHHHHHHHHHCCCCCCCC
Q ss_conf 010022222101335864
Q gi|254781030|r 9 MVATHAQRAIYDKKDGWN 26 (38)
Q Consensus 9 mvathaqraiydkkdgwn 26 (38)
-||-||.|...--+|-|-
T Consensus 55 HVAKHaRRtvNPP~dTWv 72 (210)
T d2a8ea1 55 HVAKHARRSVNPPADSWV 72 (210)
T ss_dssp EECCCTTTCSSCCSCEEE
T ss_pred HHHHHHCCCCCCCCCCEE
T ss_conf 466663256799825345
No 5
>d1c8ua2 d.38.1.3 (A:116-286) Thioesterase II (TesB) {Escherichia coli [TaxId: 562]}
Probab=2.09 E-value=1.3e+02 Score=12.85 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=4.9
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 2200100222221
Q gi|254781030|r 6 NGAMVATHAQRAI 18 (38)
Q Consensus 6 ngamvathaqrai 18 (38)
+|..||+-+|.++
T Consensus 154 dG~LvAs~~QEgl 166 (171)
T d1c8ua2 154 DGVLVASTVQEGV 166 (171)
T ss_dssp TCCEEEEEEEEEE
T ss_pred CCCEEEEEEEEEE
T ss_conf 9999999888889
No 6
>d3b48a1 c.54.1.2 (A:1-132) Uncharacterized protein EF1359 {Enterococcus faecalis [TaxId: 1351]}
Probab=2.02 E-value=2.8e+02 Score=11.29 Aligned_cols=13 Identities=38% Similarity=0.642 Sum_probs=6.6
Q ss_pred HHHHHCCCCCCCC
Q ss_conf 2222101335864
Q gi|254781030|r 14 AQRAIYDKKDGWN 26 (38)
Q Consensus 14 aqraiydkkdgwn 26 (38)
++.+.--.|.|||
T Consensus 120 ~~~a~~agk~G~~ 132 (132)
T d3b48a1 120 LAEAQNAGKKGWN 132 (132)
T ss_dssp HHHHHTCCCCSCC
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999860579
No 7
>d1f1sa3 b.24.1.1 (A:912-984) Hyaluronate lyase {Streptococcus agalactiae [TaxId: 1311]}
Probab=1.97 E-value=2e+02 Score=11.98 Aligned_cols=14 Identities=43% Similarity=0.942 Sum_probs=9.4
Q ss_pred HHHHHCCCCCC-CCH
Q ss_conf 22221013358-640
Q gi|254781030|r 14 AQRAIYDKKDG-WNL 27 (38)
Q Consensus 14 aqraiydkkdg-wnl 27 (38)
-+.+|||++.+ |..
T Consensus 10 klQ~vyD~~q~vwgV 24 (73)
T d1f1sa3 10 KQQVIYDKNSQTWAV 24 (73)
T ss_dssp SEEEEEETTTTEEEE
T ss_pred HHEEEECCCCCEEEE
T ss_conf 020022212764899
No 8
>d1n7oa2 b.24.1.1 (A:815-890) Hyaluronate lyase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=1.93 E-value=2.1e+02 Score=11.93 Aligned_cols=14 Identities=36% Similarity=1.068 Sum_probs=9.4
Q ss_pred HHHHHCCCCCC-CCH
Q ss_conf 22221013358-640
Q gi|254781030|r 14 AQRAIYDKKDG-WNL 27 (38)
Q Consensus 14 aqraiydkkdg-wnl 27 (38)
-+.+|||++.+ |..
T Consensus 9 klQ~VyD~kQ~vwgV 23 (76)
T d1n7oa2 9 TLQSVYDAKQGVWGI 23 (76)
T ss_dssp SEEEEEETTTTEEEE
T ss_pred HHHEEECCCCCEEEE
T ss_conf 020011201764899
No 9
>d1i8na_ g.10.1.2 (A:) Anti-platelet protein {Leech (Haementeria officinalis) [TaxId: 6410]}
Probab=1.91 E-value=2.6e+02 Score=11.44 Aligned_cols=17 Identities=29% Similarity=0.761 Sum_probs=12.2
Q ss_pred HHHCCCCCCCCHHHCEE
Q ss_conf 22101335864011100
Q gi|254781030|r 16 RAIYDKKDGWNLKKNIK 32 (38)
Q Consensus 16 raiydkkdgwnlkknik 32 (38)
..-+.|..||.|..|+-
T Consensus 8 edcwskrpgwklpdnll 24 (89)
T d1i8na_ 8 EDCWSKRPGWKLPDNLL 24 (89)
T ss_dssp SEEEEEEETCBCCGGGE
T ss_pred CCHHCCCCCCCCCCCCC
T ss_conf 01110388876872100
No 10
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.77 E-value=1.8e+02 Score=12.17 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=14.2
Q ss_pred HHHHCCCCCCCCHHHCEEEC
Q ss_conf 22210133586401110002
Q gi|254781030|r 15 QRAIYDKKDGWNLKKNIKID 34 (38)
Q Consensus 15 qraiydkkdgwnlkknikid 34 (38)
|-.-|.-.|.-|||..||..
T Consensus 6 qyc~yrsadssnlkthiktk 25 (30)
T d1klra_ 6 QYCEFRSADSSNLKTHIKTK 25 (30)
T ss_dssp SSSSCCCSCSHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHCC
T ss_conf 41300136622345552212
Done!