RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781030|ref|YP_003065443.1| hypothetical protein
CLIBASIA_04660 [Candidatus Liberibacter asiaticus str. psy62]
         (38 letters)



>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
          Length = 492

 Score = 24.1 bits (53), Expect = 8.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 4   AMNGAMVATHA 14
           AMN  MVA +A
Sbjct: 239 AMNREMVARYA 249


>gnl|CDD|183532 PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional.
          Length = 615

 Score = 24.0 bits (53), Expect = 8.9
 Identities = 7/11 (63%), Positives = 10/11 (90%)

Query: 6   NGAMVATHAQR 16
           NG+++ATHA R
Sbjct: 217 NGSLLATHADR 227


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.315    0.125    0.362 

Gapped
Lambda     K      H
   0.267   0.0816    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 567,194
Number of extensions: 15924
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 3
Length of query: 38
Length of database: 5,994,473
Length adjustment: 12
Effective length of query: 26
Effective length of database: 5,735,177
Effective search space: 149114602
Effective search space used: 149114602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (22.9 bits)